View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10351_low_4 (Length: 415)
Name: NF10351_low_4
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_low_4 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 33492966 - 33492570
Alignment:
| Q |
1 |
ttgctaaatttggttgattagtagttcaaccgattgaatgttgttattggataatttaagaataaaattagtttacaaatattatgtagnnnnnnnagat |
100 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |
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| T |
33492966 |
ttgctaaatttggttgattagtaattcaactg-----atgttgttattggataatttaagaataaaattagtttactactattatgtagtttttttagat |
33492872 |
T |
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| Q |
101 |
gaaatattatgcagtttgatttcacgactatattatcttgttgtaattgacatgcttgtacattgattggatttgacgttgttatatctcataaattgtc |
200 |
Q |
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| T |
33492871 |
gaaatattatgcagtttgatttcacgactatattatcttgttgtaattgacatgcttatacattgattggatttgacgttgttatatctcataaattgcc |
33492772 |
T |
|
| Q |
201 |
atgcttgatcatagttttaaatcacggttgcggtcacttataaagttgggtgtcgcagttgcgtttatgatggttgcaattaccgttgttgcgccgtgaa |
300 |
Q |
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| T |
33492771 |
atgcttcatcatggttttaaatcgcggttgcggtcatctataaagttgggtgtagcagttgcgtttatgatggttgcaattaccgttgttgcgccgtgaa |
33492672 |
T |
|
| Q |
301 |
ataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatctattagagtatagtctttgttgctacgtaaatgcagtc |
400 |
Q |
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| T |
33492671 |
ataattttaaattttca-caaactatataaagcgaaaccacgatgttactacacaatttatc-----aagtatagtctgtgttgctacgtaaatgcagtc |
33492578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 3975444 - 3975369
Alignment:
| Q |
286 |
ttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
362 |
Q |
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||||||| |||||||| |||||||||| |||| ||||||||||||| || ||||| || ||||||||||||||||| |
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| T |
3975444 |
ttgttgcagcgtgaaatgattttaaattttcac-aaactatataaagtgacaccaccatactactacactatttatc |
3975369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 32520202 - 32520126
Alignment:
| Q |
285 |
gttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
362 |
Q |
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| T |
32520202 |
gttgttgcggcgtgaaataattttaaattttcac-aaactatataaagtgacaccaccatgctattacactatttatc |
32520126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 6348 - 6283
Alignment:
| Q |
295 |
cgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttat |
361 |
Q |
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||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||| |
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| T |
6348 |
cgtgaaataattttaaattttcaa-aaactatataaagcgacaccagcatgctactacacaatttat |
6283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 7893 - 7828
Alignment:
| Q |
295 |
cgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttat |
361 |
Q |
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||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||| |
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| T |
7893 |
cgtgaaataattttaaattttcaa-aaactatataaagcgacaccagcatgctactacacaatttat |
7828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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