View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10351_low_5 (Length: 396)
Name: NF10351_low_5
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 41922403 - 41922027
Alignment:
| Q |
15 |
ccaccgaacaatgcagacacactctggnnnnnnnctaggcaatattcacctaactaaaacaaacaacgaagtctaacagtgaattcggccagtaattaaa |
114 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41922403 |
ccaccgaacaatgcagacacacactggaaaaaaactaggcaatattcacctaactaaaacaaacaacgaagtctaacagtgaattcgaccagtaattaaa |
41922304 |
T |
|
| Q |
115 |
gaattgtgtgtcgcaacttgtatgttgtgatgcagatcactacataagcaacacaagcacagttcaaaaacggtgctaaactaaatccaattgagtatca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41922303 |
gaattgtgtgtcgcaacttgtatgttgtgatgcagatcactacataagaaacacaacaacagttcaaaaacggtgctaaactaaatccaattgagtatca |
41922204 |
T |
|
| Q |
215 |
gattacaactaaccggcaacactagaaaacaataaaaatttatattggcagagca-------cgatgtaca-------cataaatcaatctcaatcaaaa |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||| | || || || | |||||||||||||||||||||| |
|
|
| T |
41922203 |
gattacaactaaccggcaacaatagaaaacaataaaaatatatattggcaaaacattcttttaaatttaaatgcagagcataaatcaatctcaatcaaaa |
41922104 |
T |
|
| Q |
301 |
tcaacggtagcataaaaaatatacctgcaacgaagctaaagatgcatcatctacgggcaaaccgcccaagtcaagaa |
377 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41922103 |
tcaacggtagcataaaaaaaatacctgcaacgaagctaaagatgcatcatctacgggcaaaccgcccaagtcaagaa |
41922027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University