View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10352_high_3 (Length: 380)
Name: NF10352_high_3
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10352_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 19105855 - 19106208
Alignment:
| Q |
19 |
ggttaatggttcctttatactggaagttgtggaagggatctcagtggtaacaagcgtaccaacaaaaaccagtctttcgatcagcagtttgagaatatga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19105855 |
ggttaatggttcctttatactggaagttgtggaagggatctcagtggtaacaagcgtaccaacaaaaaccagtctttcgatcagcagtttgagaatatga |
19105954 |
T |
|
| Q |
119 |
ttgaggctttaagactatgttgccaaaaaggttgtcctgtttgtgtttttaggtcaatttttactcattatgaattaattcaactgatgcattccttctc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
19105955 |
ttgaggctttaagactatgttgccaaaaaggttgtcctgtttgtgtttttaggtcaatttttactcattatgaattaattcaactgatgaattccttgcc |
19106054 |
T |
|
| Q |
219 |
agtttgttaggtctgtttttattaataaattcaattgattgattgtttccatattagcttagtttcattgtaaagttatgtgatgaattagtatgatatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
19106055 |
agtttgttaggtctgtttttattaataaattcaattgattgattgtttccatattagcttagtttcattgtaaagttatgcgatgaattggtatgatatt |
19106154 |
T |
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| Q |
319 |
ttgtttatagattcgtttatttggttcagatcccacagggaaaaacgttcctct |
372 |
Q |
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| T |
19106155 |
ttgtttatagattcgtttatttcgttcagatcccacagggaaaaacgttcctct |
19106208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 372
Target Start/End: Complemental strand, 43193209 - 43192862
Alignment:
| Q |
25 |
tggttcctttatactggaagttgtggaagggatctcagtggtaacaagcgtaccaacaaaaaccagtctttcgatcagcagtttgagaatatgattgagg |
124 |
Q |
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| T |
43193209 |
tggttcctttacactggaagcggtggaagggatctcagtgggaataaacgcacgaacaaaaaccagtcatttgaccagaagtttgaaaatatgaatgagg |
43193110 |
T |
|
| Q |
125 |
ctttaagactatgttgccaaaaaggttgtcctgtttgtgtttttaggtcaatttttactcattatgaatt-aattcaactgatgcattccttctcagttt |
223 |
Q |
| |
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|||| || |||||| |||||| | ||||||| ||||| ||||||| |||||| | |||||||||| |||||||||||| ||| ||| | ||||| |
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| T |
43193109 |
ctttgcgaaccagttgccgaaaaggctatcctgttcgtgttgttaggtctgtttttatttattatgaattcaattcaactgatcgatttcttattagttt |
43193010 |
T |
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| Q |
224 |
gttaggtctgtttttattaataa--attcaattgattgattgtttccatattagcttagtttcattgtaaagttatgtgatgaattagtatgatattttg |
321 |
Q |
| |
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||||| |||||||||||| || | | |||| ||||| |||| |||| |||| | ||||||||||||| | ||||||| ||||| ||||| ||||||| |
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| T |
43193009 |
gttagatctgtttttattgattataaatcaactgattaattgattccttatttggttagtttcattgtga---tatgtgaggaattggtatgctattttg |
43192913 |
T |
|
| Q |
322 |
tttatagattcgtttatttggttcagatcccacagggaaaaacgttcctct |
372 |
Q |
| |
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|| || ||| ||||||||||||||| ||||||| ||| |||||||||||| |
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|
| T |
43192912 |
ttcatggatctgtttatttggttcaggtcccacaaggagaaacgttcctct |
43192862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 43194663 - 43194854
Alignment:
| Q |
25 |
tggttcctttatactggaagttgtggaagggatctcagtggtaacaagcgtaccaacaaaaaccagtctttcgatcagcagtttgagaatatgattgagg |
124 |
Q |
| |
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||||||||||| || |||||| | || || |||||||| ||||| || ||||| |||||||| |||||||| ||||| ||||||||||| |||| ||||| |
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| T |
43194663 |
tggttcctttacacaggaagtggcgggagagatctcagcggtaataaacgtacaaacaaaaatcagtcttttgatcaacagtttgagaacatgaatgagg |
43194762 |
T |
|
| Q |
125 |
ctttaagactatgttgccaaaaaggttgtcctgtttgtgtttttaggtcaatttttactcattatgaatt-aattcaactgatgcattcctt |
215 |
Q |
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|| | ||||| |||| | |||||||| ||||||| ||||| ||||||| |||||| | |||||||||| ||||||| |||| ||||||| |
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| T |
43194763 |
ctctcagactgagttgtcgaaaaggttatcctgttcgtgttgttaggtccgtttttattgattatgaattcaattcaattgattgattcctt |
43194854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 43194895 - 43194947
Alignment:
| Q |
316 |
attttgtttatagattcgtttatttggttcagatcccacagggaaaaacgttc |
368 |
Q |
| |
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||||||||||| |||| |||||| |||||||| ||||||| ||| |||||||| |
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| T |
43194895 |
attttgtttatggatttgtttatctggttcaggtcccacaaggagaaacgttc |
43194947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 364
Target Start/End: Original strand, 53672310 - 53672459
Alignment:
| Q |
222 |
ttgttaggtctgtttttattaataa---attcaattgattgattgtttccatattagcttagtttcattgtaaagttatgtg----atgaattagtatga |
314 |
Q |
| |
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||||||||| |||||||||| || | ||||||||||||||||| |||| ||||| ||||||||||||| | ||| |||| |||||| |||||| |
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| T |
53672310 |
ttgttaggtatgtttttattgattatgaattcaattgattgattgattccttattattttagtttcattgtgatgttgtgtgaggaatgaatgggtatga |
53672409 |
T |
|
| Q |
315 |
tattttgtttatagattcgtttatttggttcagatcccacagggaaaaac |
364 |
Q |
| |
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|||||| |||| | |||||||||||| ||||| ||||||| ||| |||| |
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| T |
53672410 |
tattttatttagggtttcgtttatttgtttcaggtcccacaaggagaaac |
53672459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 30532553 - 30532610
Alignment:
| Q |
29 |
tcctttatactggaagttgtggaagggatctcagtggtaacaagcgtaccaacaaaaa |
86 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| || |||||||| ||||| |
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| T |
30532553 |
tcctttataccggaagtggtggaagggatctcagtggtaagaaacgtaccaataaaaa |
30532610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 12498189 - 12498226
Alignment:
| Q |
97 |
gatcagcagtttgagaatatgattgaggctttaagact |
134 |
Q |
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| T |
12498189 |
gatcagcagtttgagaacatgattgaggctttgagact |
12498226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 30531154 - 30531195
Alignment:
| Q |
29 |
tcctttatactggaagttgtggaagggatctcagtggtaaca |
70 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||| |
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| T |
30531154 |
tcctttataccagaagtggtggaagggatctcagtggtaaca |
30531195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 30935550 - 30935517
Alignment:
| Q |
310 |
tatgatattttgtttatagattcgtttatttggt |
343 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
30935550 |
tatgatattttgtttatggattcgtttatttggt |
30935517 |
T |
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