View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10352_low_1 (Length: 631)
Name: NF10352_low_1
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10352_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 47117381 - 47116765
Alignment:
| Q |
1 |
gaaaggaataatagctaccacaggggagcgaggccgcgctgctcttccaccaccaagtccgatgcttctagtgccactaattgcagaatagtcaagagga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47117381 |
gaaagaaataatagctaccacaggggagcgaggccgcgctgctcttccaccaccaagtccgatgcttctagtgccactaattgcagaatagtcaagagga |
47117282 |
T |
|
| Q |
101 |
acatcgtcatcgtcttcttcttcatcaattgtttgatgcgacataacttgtgcgagtcgttgagcagcggcttttgtggcattgttttgtgttctcccga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47117281 |
acatcgtcatcgtcttcttcttcatcaattgtttgatgcgacataacttgtgcaagtcgttgagcagcggcttttgtggcattgttttgtgttctcccga |
47117182 |
T |
|
| Q |
201 |
tgttgttcatggcagaacctgtggaacctgcacgagcatgtcggttcaatggcgacatcatcaccggcgaagatggtgatgttggcgttcccgttgagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
47117181 |
tgttgttcatggcagaacctgtggaacctgcacgagcatgtcgattcaatggcgacatcatcaccggtgaagacggtgatgttggcgttcccgttgagct |
47117082 |
T |
|
| Q |
301 |
ttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcgatcgagtcattgatacgttgatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47117081 |
ttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtga----tcgagtcattgatacgttgatatt |
47116986 |
T |
|
| Q |
401 |
gcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116985 |
gcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttg |
47116886 |
T |
|
| Q |
501 |
ataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtatgagga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47116885 |
ataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtatgagga |
47116786 |
T |
|
| Q |
601 |
agcttggagtgatgtccatct |
621 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
47116785 |
agcttggagtggtgtccatct |
47116765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University