View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10352_low_10 (Length: 273)

Name: NF10352_low_10
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10352_low_10
NF10352_low_10
[»] chr8 (2 HSPs)
chr8 (17-273)||(15349049-15349305)
chr8 (50-211)||(4962191-4962356)
[»] chr4 (25 HSPs)
chr4 (17-273)||(48898903-48899162)
chr4 (28-145)||(45365870-45365987)
chr4 (34-273)||(7773481-7773717)
chr4 (17-142)||(48870857-48870982)
chr4 (17-142)||(48876161-48876286)
chr4 (17-142)||(48886543-48886668)
chr4 (17-138)||(7790381-7790502)
chr4 (17-78)||(48864396-48864457)
chr4 (17-90)||(7765991-7766064)
chr4 (17-138)||(7771696-7771817)
chr4 (17-78)||(45384531-45384592)
chr4 (33-90)||(48156084-48156141)
chr4 (17-89)||(7878733-7878805)
chr4 (18-78)||(49038518-49038578)
chr4 (20-88)||(49043810-49043878)
chr4 (23-78)||(48147358-48147413)
chr4 (17-87)||(48853033-48853103)
chr4 (50-135)||(7237415-7237500)
chr4 (17-90)||(7786813-7786886)
chr4 (17-78)||(7908663-7908724)
chr4 (17-78)||(45371713-45371774)
chr4 (47-80)||(48903314-48903347)
chr4 (17-78)||(7813838-7813899)
chr4 (47-87)||(48861640-48861680)
chr4 (20-88)||(50666666-50666734)
[»] chr3 (3 HSPs)
chr3 (17-144)||(47451539-47451666)
chr3 (21-78)||(11024146-11024203)
chr3 (33-78)||(11005583-11005628)
[»] chr5 (5 HSPs)
chr5 (34-144)||(9120058-9120168)
chr5 (17-78)||(42561972-42562033)
chr5 (47-98)||(179399-179450)
chr5 (17-78)||(29688490-29688551)
chr5 (20-78)||(29712083-29712141)
[»] chr1 (3 HSPs)
chr1 (34-78)||(24310577-24310621)
chr1 (18-85)||(24416132-24416199)
chr1 (14-70)||(24323139-24323195)
[»] chr6 (2 HSPs)
chr6 (167-222)||(21979420-21979475)
chr6 (47-75)||(21979297-21979325)
[»] chr7 (1 HSPs)
chr7 (17-87)||(48884176-48884246)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 15349305 - 15349049
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaa 15349206  T
Q  117 aattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15349205 aattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaa 15349106  T
Q  217 caataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatgaatagccc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349105 caataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatgaatagccc 15349049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 4962191 - 4962356
Alignment:
Q  50 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaa-tcac- 147  Q
    ||||||||||||||||||||||||||||| ||||  |||  |||||||| |   ||| ||||| | |||||| ||||| |||||||||||| || | ||     
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaaccataacttaca 4962290  T
Q  148 --cagcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaa 211  Q
      |||  ||||  ||||||||||  ||| |||||||||| |||| |||||||||  ||||||||||    
T  4962291 gacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaa 4962356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 48899162 - 48898903
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| ||  ||||||||| || || ||||| ||||||||||||||||||||||||| | ||||||||| |||||  | || ||| | ||| |||    
T  48899162 aagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaa 48899063  T
Q  117 aattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaa 216  Q
    || || |||||||||||||||||||||||   || |  |||||| |||||||||||| ||| |||||| ||||||||||||||  |||||||||| ||||    
T  48899062 aaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaa 48898963  T
Q  217 caataaagttatcacgccaagga---aaatcacgatgaaaagccaaccaatgaatagccc 273  Q
    |||| |  ||||||  ||| |||   ||||||||||||||||||||||||||||||||||    
T  48898962 caatgacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagccc 48898903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 45365870 - 45365987
Alignment:
Q  28 tctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaa 127  Q
    ||||||||||||| ||   |||||| ||||||||||||||||||||||||| | ||||||||  ||||||| ||| ||||| ||| |||||||| |||||    
T  45365870 tctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaa 45365969  T
Q  128 gacccacaaaccacaatc 145  Q
     |||||||||||||||||    
T  45365970 tacccacaaaccacaatc 45365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 273
Target Start/End: Original strand, 7773481 - 7773717
Alignment:
Q  34 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 133  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| || |||| ||| ||| | ||||| | |||| ||||| |||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  134 caaaccacaat-cacca--gcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatca 230  Q
    ||||||| |||  ||||  |||  ||| | || || || |||| ||||||||||||||| |||||||||  |||||||||| | |||||| |      ||    
T  7773581 caaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaatta------ca 7773674  T
Q  231 cgccaaggaaaatcacgatgaaaagccaaccaatgaatagccc 273  Q
      |||| | ||||||||| | ||||||||||||||||||||||    
T  7773675 ttccaacgtaaatcacgacgcaaagccaaccaatgaatagccc 7773717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 48870982 - 48870857
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48870982 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48870883  T
Q  117 aattcgccaaagacccacaaaccaca 142  Q
    ||||| ||||| ||||||||||||||    
T  48870882 aattccccaaatacccacaaaccaca 48870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 48876286 - 48876161
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48876286 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48876187  T
Q  117 aattcgccaaagacccacaaaccaca 142  Q
    ||||| ||||| ||||||||||||||    
T  48876186 aattccccaaatacccacaaaccaca 48876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 48886668 - 48886543
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48886668 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48886569  T
Q  117 aattcgccaaagacccacaaaccaca 142  Q
    ||||| ||||| ||||||||||||||    
T  48886568 aattccccaaatacccacaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 7790502 - 7790381
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| | || |||||||| || | |||||||||||||||||||||||||||||||| | ||||||||  ||||||| |||  || | ||| | |    
T  7790502 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgaga 7790403  T
Q  117 aattcgccaaagacccacaaac 138  Q
    ||||| ||||| ||||||||||    
T  7790402 aattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 48864457 - 48864396
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 7766064 - 7765991
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 90  Q
    |||||||||  |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattag 7765991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 7771817 - 7771696
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| | || ||||| || || | |||||||||||||||||||||||||||| ||| | ||||||||  ||||||| |||  || | ||| | |    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgaga 7771718  T
Q  117 aattcgccaaagacccacaaac 138  Q
    ||||| ||||| ||||||||||    
T  7771717 aattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 45384531 - 45384592
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    ||||||| || ||||||||||||| || | |||||| |||||||||||||||||||||||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 48156084 - 48156141
Alignment:
Q  33 gtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 90  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||| ||| |||||||    
T  48156084 gtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattag 48156141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7878805 - 7878733
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatta 89  Q
    |||||||||| | ||  ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcatta 7878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 49038518 - 49038578
Alignment:
Q  18 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    ||||||||| |||| |||||||| || |  |||||||||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 49043810 - 49043878
Alignment:
Q  20 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 88  Q
    ||||||| |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcatt 49043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 48147358 - 48147413
Alignment:
Q  23 aagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||| |||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 48853103 - 48853033
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 87  Q
    |||||||||| |||| |||||||| ||   |||||||||||||||||| ||||||||||||| | ||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 48853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 7237415 - 7237500
Alignment:
Q  50 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccaca 135  Q
    ||||||||||||||||||||||||| ||| | ||||||||  |||||||  || ||| ||||| | |||||| ||||| |||||||    
T  7237415 tttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 7786886 - 7786813
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 90  Q
    |||||||||| ||||  |||||||  | | ||| |||||||||||||||||||||||||||| | |||||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattag 7786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||||||||||||||||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 45371713 - 45371774
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||||| | |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 45371774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 48903347 - 48903314
Alignment:
Q  47 cactttgtattctttcatcacccatatttcaaat 80  Q
    ||||||||||||||||||||||||||||||||||    
T  48903347 cactttgtattctttcatcacccatatttcaaat 48903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||| ||||||||||||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 48861680 - 48861640
Alignment:
Q  47 cactttgtattctttcatcacccatatttcaaatctatcat 87  Q
    ||||||||||||||| || ||||||||||||||| ||||||    
T  48861680 cactttgtattcttttattacccatatttcaaatgtatcat 48861640  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 50666734 - 50666666
Alignment:
Q  20 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 88  Q
    ||||||| | || |||||||| || | |||||||||||||| ||||||||||| ||||| | |||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcatt 50666666  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 47451539 - 47451666
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 116  Q
    |||||||||| |||||  |||||| || || ||||||||||||||||||||||||||||||| | |||||||| || |||||  |  ||  ||||||| |    
T  47451539 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaaga 47451638  T
Q  117 aattcgccaaagacccacaaaccacaat 144  Q
    ||||| ||||| ||||||||||||||||    
T  47451639 aattctccaaatacccacaaaccacaat 47451666  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  21 acaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||| |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 11005583 - 11005628
Alignment:
Q  33 gtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||||| || | |||||||||||||||||| |||||||||||||    
T  11005583 gtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 9120168 - 9120058
Alignment:
Q  34 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 133  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||| ||| | ||| | |||||| ||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  134 caaaccacaat 144  Q
    || | ||||||    
T  9120068 cacatcacaat 9120058  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 42561972 - 42562033
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| ||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 42562033  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 179450 - 179399
Alignment:
Q  47 cactttgtattctttcatcacccatatttcaaatctatcattaggataatcc 98  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatcc 179399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 29688551 - 29688490
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||| ||| ||||||||||||| || | ||| ||||||| ||||||||||||||||||||    
T  29688551 aagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 29712083 - 29712141
Alignment:
Q  20 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    ||||||| |||| |||||||||||  |||| ||||||| || |||||||||||||||||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 29712141  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 24310621 - 24310577
Alignment:
Q  34 tccaagaagagttcactttgtattctttcatcacccatatttcaa 78  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||    
T  24310621 tccaagaagactgcactttgtattctttcatcacccatatatcaa 24310577  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  18 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatc 85  Q
    ||||||||| | || |||||||| || | | ||||||||||||||||||||||||| |||| ||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 24323195 - 24323139
Alignment:
Q  14 atcaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcaccca 70  Q
    ||||||||||||| | || ||| |||| || | ||||||||||||||||||||||||    
T  24323195 atcaagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 21979420 - 21979475
Alignment:
Q  167 atctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataa 222  Q
    ||||||| |||| |||||||| |||||||||||  |||||||||| ||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataa 21979475  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 21979297 - 21979325
Alignment:
Q  47 cactttgtattctttcatcacccatattt 75  Q
    |||||||||||||||||||||||||||||    
T  21979297 cactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  17 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 87  Q
    |||||||||| |||| ||||||||    | |||||||||||||||||||||| ||||||||| | ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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