View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10352_low_11 (Length: 251)
Name: NF10352_low_11
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10352_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 42738384 - 42738196
Alignment:
| Q |
1 |
atatattttaggcatgctattattatttttatgtcatagtataatgtcactatatgctaaaatcggttattacaatttcatattacaaccacgttacgtt |
100 |
Q |
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| T |
42738384 |
atatattttaggcatgctattattatttttatgtcatagtataatgtcactatatgctaaaatcggttattacaatttcatattacaaccacgttacgtt |
42738285 |
T |
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| Q |
101 |
aaatatgagtttatttgcagagtgttgaagaatatatcaaaaactataattgctatagttgctaaagaaggttagctaattaatttgcg |
189 |
Q |
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| T |
42738284 |
aaatatgagtttatttgcagagtgttgaagaatatatcaaaaactataattgctatagttgctaaagaaggttagctaattaatttgcg |
42738196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 42745815 - 42745756
Alignment:
| Q |
116 |
tgcagagtgttgaagaatatatcaaaaactataattgctatagttgctaaagaaggttag |
175 |
Q |
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| T |
42745815 |
tgcagggtattgaagaatatatcaaaaactttaattgccatagttgcaaaagaaggttag |
42745756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 42738184 - 42738153
Alignment:
| Q |
210 |
gttactcttcaaaattttcgtgtttctctctg |
241 |
Q |
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| T |
42738184 |
gttactcttcaaaattttcgtgtttctctctg |
42738153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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