View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10352_low_12 (Length: 247)
Name: NF10352_low_12
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10352_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 42738634 - 42738405
Alignment:
| Q |
18 |
ataattactatatattatcattagatttttaatttggtttgatatagtataaacttacattttgcatatattgccaagttcgtgctgattccatgcattg |
117 |
Q |
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| T |
42738634 |
ataattactatatattatcatttgatttttaatttggtttgatatagtataaacttacattttgcatatattgccaagttcgtgctgattccatgcattg |
42738535 |
T |
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| Q |
118 |
atgtattatatgttatctgcagaatattgaaatagttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagagacccttggagtggtgga |
217 |
Q |
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| T |
42738534 |
atgtattatatgttatctgcagaatattgaaatagttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagagacccttggagtggtgga |
42738435 |
T |
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| Q |
218 |
gggtaaagccttattatctcttctatcatc |
247 |
Q |
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| T |
42738434 |
gggtaaagccttattatctcttctatcatc |
42738405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 42746033 - 42745962
Alignment:
| Q |
151 |
agttctcaaaagatctgtgggaaacatcatatttttcaatggtttaagagacccttggagtggtggagggta |
222 |
Q |
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| T |
42746033 |
agttctgaaaagatatgggagcaacattatcttcttcaatggtttaagagacccttggagtggtggagggta |
42745962 |
T |
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