View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10352_low_13 (Length: 239)
Name: NF10352_low_13
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10352_low_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36075218 - 36074980
Alignment:
| Q |
1 |
accgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccg |
100 |
Q |
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| T |
36075218 |
accgaagattttgattctcctcctagatgcaatggaggtccagctgctatcgaagatttaagttttccatctaaatataatggaggttcagatgctaccg |
36075119 |
T |
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| Q |
101 |
aagatttaggttccccttctaaatgtaacggaggttcagatgctactgaaggttcacataagtgcaacggaggtccaaatgctactgaagatttaagttt |
200 |
Q |
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| T |
36075118 |
aagatttaggttccccttctaaatgtaacggaggtccagatgctaccgaaggttcacataagtgcaacggaggtccaaatgttactgaagatttaagttt |
36075019 |
T |
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| Q |
201 |
cattcccaagtacaacataggtttagatgctatagaaga |
239 |
Q |
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| T |
36075018 |
cattcccaagtacaacataggtttagatgctatagaaga |
36074980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 36146593 - 36146394
Alignment:
| Q |
1 |
accgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccg |
100 |
Q |
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||||||||||||||||| || || |||||||||||| ||| || || |||| ||||||||| ||||||||||| |||||||||| ||||||||||| |
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| T |
36146593 |
accgaagatttagattccccttctaagtgcaatggaggttcagatgttaccgaaaatttaagttccccatctaaatgcaatggaggtcaagatgctaccg |
36146494 |
T |
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| Q |
101 |
aagatttaggttccccttctaaatgtaacggaggttcagatgctactgaaggttcacataagtgcaacggaggtccaaatgctactgaagatttaagttt |
200 |
Q |
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| T |
36146493 |
aagatttaggttctcctcctaagtgcaatggagatctagatgctatcgaaggttcgccaaagtgcaatggaggcccagatgttaccgaagatttaggttt |
36146394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 36146600 - 36146548
Alignment:
| Q |
90 |
agatgctaccgaagatttaggttccccttctaaatgtaacggaggttcagatg |
142 |
Q |
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| T |
36146600 |
agatgttaccgaagatttagattccccttctaagtgcaatggaggttcagatg |
36146548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 26530575 - 26530717
Alignment:
| Q |
3 |
cgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccgaa |
102 |
Q |
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||||||||||| ||| ||| || ||||||||||||| || ||||| | |||||||| |||||||| |||| | | ||||||| |||||||| ||||| |
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| T |
26530575 |
cgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtttcccacctaagtgcattggaggttcagatgctgccgaa |
26530674 |
T |
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| Q |
103 |
gatttaggttccccttctaaatgtaacggaggttcagatgctac |
146 |
Q |
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| T |
26530675 |
gatttgggtttccc-tataagtgcaatggaggttcaaatgctac |
26530717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 26530572 - 26530668
Alignment:
| Q |
48 |
tatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccgaagatttaggttccccttctaaatgtaacggaggttcagatgct |
144 |
Q |
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| T |
26530572 |
tatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtttcccacctaagtgcattggaggttcagatgct |
26530668 |
T |
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