View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10352_low_6 (Length: 352)
Name: NF10352_low_6
Description: NF10352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10352_low_6 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 826183 - 826510
Alignment:
| Q |
18 |
aaattgtggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaa |
117 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| | |||| ||| ||||||||||| ||||| | ||||||||||| ||| ||||||||||| || ||| |
|
|
| T |
826183 |
aaattgtggaagtagggtgatcatcacaacacgctacgaaagagttgcagaggttgcacatacgtatcctattcataaattggaacctctatcggacgaa |
826282 |
T |
|
| Q |
118 |
gattgttggtctttgctctctaagcatgcatttggaagtggtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtg |
217 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||||| ||||| ||||| | ||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
826283 |
cattgttggtctttactctccaagtatgcatttggaagtggtgacattaaatacccaaccttagaagcaattgggaagaagattgcaaaaaagtgtggtg |
826382 |
T |
|
| Q |
218 |
gattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacatacc |
317 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||||||||||| |||||| || ||||||| | |||||| | ||||||||| || |||||||||||||||| |
|
|
| T |
826383 |
gattgccaatagctgccaaaacgctaggagggcttttgagctcaaagttaaatgcaaaggagtggaccgaaatcttgaacagcaacatatggaacatacc |
826482 |
T |
|
| Q |
318 |
aaatgataatattatgccttctctgctt |
345 |
Q |
| |
|
|||| |||| ||| ||||| || ||||| |
|
|
| T |
826483 |
aaataataacattctgcctgctttgctt |
826510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 40)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 33 - 330
Target Start/End: Original strand, 13344376 - 13344682
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
13344376 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13344475 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg------gtggagataaa---tccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||| ||||||| || ||| || | | |||||| ||||||| |||||| | |||||||| | ||||||||||||||| | |
|
|
| T |
13344476 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
13344575 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
13344576 |
ccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacatatggaacttaccaaatga |
13344675 |
T |
|
| Q |
324 |
taatatt |
330 |
Q |
| |
|
||||||| |
|
|
| T |
13344676 |
taatatt |
13344682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 33 - 330
Target Start/End: Original strand, 13171318 - 13171624
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
13171318 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13171417 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg------gtggagataaa---tccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||| ||||||| || ||| || | | |||||| ||||||| |||||| | |||||||| | ||||||||||||||| | |
|
|
| T |
13171418 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
13171517 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| |||||| |||||||| ||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
13171518 |
ccatagctcctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacatatggaacttaccaaatga |
13171617 |
T |
|
| Q |
324 |
taatatt |
330 |
Q |
| |
|
||||||| |
|
|
| T |
13171618 |
taatatt |
13171624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 325
Target Start/End: Original strand, 13333191 - 13333492
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
13333191 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13333290 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg------gtggagataaa---tccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||| ||||||| || ||| || | | |||||| ||||||| |||||| | |||||||| | ||||||||||||||| | |
|
|
| T |
13333291 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
13333390 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
13333391 |
ccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacatatggaacttaccaaatga |
13333490 |
T |
|
| Q |
324 |
ta |
325 |
Q |
| |
|
|| |
|
|
| T |
13333491 |
ta |
13333492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 9850018 - 9850332
Alignment:
| Q |
25 |
ggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgtt |
124 |
Q |
| |
|
||||||| |||||| || |||||||| | ||||||| || ||||| || || |||||||| || |||| |||||| | ||||||| |||||||||||| |
|
|
| T |
9850018 |
ggaagcatggtgattataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatcaaatgaagattgtt |
9850117 |
T |
|
| Q |
125 |
ggtctttgctctctaagcatgcatttggaagtggtggag-------ataaatc---cccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||| || || ||| || | || ||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
9850118 |
ggtctttactctcaaagcatgcattgggaagtgatg-agtttcaccatagttcaaacacagcccttgaagaaataggcaggaagattgcaagaaagtgtg |
9850216 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacat |
314 |
Q |
| |
|
| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || || ||||||| |||| ||||| ||||||||||||||| | |
|
|
| T |
9850217 |
gaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataagtgagtggacttcaattttgaacagtgacatatggaactt |
9850316 |
T |
|
| Q |
315 |
accaaatgataatatt |
330 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
9850317 |
atcaaatgataatatt |
9850332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 325
Target Start/End: Original strand, 10500907 - 10501162
Alignment:
| Q |
79 |
acatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttgg-----aag----tggtggagataaat |
169 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||| |||||||||||||| ||| || | | | ||||| |
|
|
| T |
10500907 |
acatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagcatgcatttggtgatgaagactatgttcgtggtaaat |
10501006 |
T |
|
| Q |
170 |
ccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtaga |
269 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||| ||||||||||||||||| || |||||||| ||| || | ||||| || ||| ||||||||| | |
|
|
| T |
10501007 |
acccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcacttggaggactattgcgttcaaaggcggt |
10501106 |
T |
|
| Q |
270 |
tgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatgata |
325 |
Q |
| |
|
|| ||| | |||||||||||| ||||||| |||||||||||| || |||||||| |
|
|
| T |
10501107 |
tgaaaaagagtggactgcaattctgaatagcgacatatggaacttaagaaatgata |
10501162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 330
Target Start/End: Original strand, 13289952 - 13290258
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
13289952 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13290051 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||||||||||| |||| ||||| |||||| || |||| |||||| | ||||| || | ||| |||||||| || | |
|
|
| T |
13290052 |
ctttcaaagcatgcatttggaagtgaagtccgtggtggtagtaaatgcccaaatctggaagaaattggtagaaagatcgccaaaaaatgtggtgggttgc |
13290151 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| |||||||||||||| |||| || ||||| |||||||||||||||| || | ||||| | |||| | |||||||||||||||||| |||||||||| |
|
|
| T |
13290152 |
ccatagctgctaaaacgctcggtggaattttgcgttcaaaggtagatgctaaagagtggagtacaattctaaatagtgacatatggaacttaccaaatga |
13290251 |
T |
|
| Q |
324 |
taatatt |
330 |
Q |
| |
|
||||||| |
|
|
| T |
13290252 |
taatatt |
13290258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 330
Target Start/End: Original strand, 13161267 - 13161573
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
13161267 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13161366 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaa---------gtggtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || |||||||||||||||| ||||||| ||||| |||||| || |||| |||||| | ||||| || | ||| |||||||| || | |
|
|
| T |
13161367 |
ctttcaaagcatgcatttggaagtgaagtccgtggtggtagtaaatgcccaaatctggaagaaattggtagaaagatcgccaaaaaatgtggtgggttgc |
13161466 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| |||||||||||||| |||| || ||||| |||||||||||||||| || | ||||| | |||| | |||||||||||||||||| |||||||||| |
|
|
| T |
13161467 |
ccatagctgctaaaacgctcggtggaattttgcgttcaaaggtagatgctaaagagtggagtacaattctaaatagtgacatatggaacttaccaaatga |
13161566 |
T |
|
| Q |
324 |
taatatt |
330 |
Q |
| |
|
| ||||| |
|
|
| T |
13161567 |
tcatatt |
13161573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 330
Target Start/End: Original strand, 9839171 - 9839454
Alignment:
| Q |
56 |
aaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaag |
155 |
Q |
| |
|
||||||| || ||||| || || |||||||| || |||| |||||| | ||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
9839171 |
aaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatcaaatgaagattgttggtctttactctcaaagcatgcattgggaag |
9839270 |
T |
|
| Q |
156 |
tggtggag-------ataaatc---cccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcgg |
245 |
Q |
| |
|
|| || || ||| || | || ||| |||| ||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| | || |
|
|
| T |
9839271 |
tgatg-agtttcaccatagttcaaacacagcccttgaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacaatagg |
9839369 |
T |
|
| Q |
246 |
agggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
||| ||| | ||||||||||||| || || ||||||| |||| ||||| || |||||||||||| || |||||||||||||| |
|
|
| T |
9839370 |
aggacttctacgttcaaaggtagacataagtgagtggacttcaattttgaacagcgacatatggaacttatcaaatgataatatt |
9839454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 56 - 290
Target Start/End: Complemental strand, 11781741 - 11781498
Alignment:
| Q |
56 |
aaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaa- |
154 |
Q |
| |
|
||||||| |||||||| || || ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||| | |
|
|
| T |
11781741 |
aaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatctcatgaagattgttggtctttactctcgaaacatgcatttggtag |
11781642 |
T |
|
| Q |
155 |
--------gtggtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcgga |
246 |
Q |
| |
|
||| | | ||||| |||||||||||||| ||||||| ||||||||| | ||| ||||||||||| ||||||||||| || ||| | ||| |
|
|
| T |
11781641 |
taaggactgtgatcgccgtaaatacccaaacctagaagagattggcaggaagattgctaaaaaatgtggtggattgccaatagctgccaagacacttgga |
11781542 |
T |
|
| Q |
247 |
gggcttttgagttcaaaggtagatgcaaatgtgtggactgcaat |
290 |
Q |
| |
|
|| ||| || |||||||||||| || ||| | ||||||| |||| |
|
|
| T |
11781541 |
ggacttatgcgttcaaaggtagttgaaaaggagtggacttcaat |
11781498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 8861563 - 8861789
Alignment:
| Q |
23 |
gtggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattg |
122 |
Q |
| |
|
||||||||| ||| ||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||||| ||||||| | |||| |||||||| |
|
|
| T |
8861563 |
gtggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatac |
8861662 |
T |
|
| Q |
123 |
ttggtctttgctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgt |
213 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||| |||||| | ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
8861663 |
atggtctttactctcaaagcatgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgt |
8861762 |
T |
|
| Q |
214 |
ggtggattaccaatagctgctaaaaca |
240 |
Q |
| |
|
| ||| || || |||||||| |||||| |
|
|
| T |
8861763 |
gctgggttgcccatagctgcaaaaaca |
8861789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 11148646 - 11148420
Alignment:
| Q |
23 |
gtggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattg |
122 |
Q |
| |
|
||||||||| ||| ||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||||| ||||||| | |||| |||||||| |
|
|
| T |
11148646 |
gtggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatac |
11148547 |
T |
|
| Q |
123 |
ttggtctttgctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgt |
213 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||| |||||| | ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11148546 |
atggtctttactctcaaagcatgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgt |
11148447 |
T |
|
| Q |
214 |
ggtggattaccaatagctgctaaaaca |
240 |
Q |
| |
|
| ||| || || |||||||| |||||| |
|
|
| T |
11148446 |
gttgggttgcccatagctgcaaaaaca |
11148420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 10196117 - 10196266
Alignment:
| Q |
181 |
gaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgt |
280 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || | || |
|
|
| T |
10196117 |
gaagcaattggcctgaagattgcaaggaagtgtggaggattgccaatagctgctaaaacactaggaggacttctacgttcaaaggtagaaataacagagt |
10196216 |
T |
|
| Q |
281 |
ggactgcaatcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
||||| |||| ||||| || |||||||||||| || |||||||||||||| |
|
|
| T |
10196217 |
ggacttcaattttgaacagcgacatatggaacttatcaaatgataatatt |
10196266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 330
Target Start/End: Complemental strand, 10433803 - 10433520
Alignment:
| Q |
56 |
aaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaag |
155 |
Q |
| |
|
||||||| || ||||| || || ||||||||||| |||| |||||||| ||||||| ||||||||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
10433803 |
aaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttactctcgaagcatgcattgggcag |
10433704 |
T |
|
| Q |
156 |
tggtggag----------ataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcgg |
245 |
Q |
| |
|
|| || || ||| | | ||| ||| |||| ||| |||| | ||||||||||||||||||| ||||| ||||| |||||||||||| | || |
|
|
| T |
10433703 |
tgatg-agtttcacctcaatacaaacacaacccttgaagaaataggcagggagattgcaagaaagtgtggaggattgccaattgctgctaaaacaatagg |
10433605 |
T |
|
| Q |
246 |
agggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
||| ||||| |||||||||||||| || | ||||||| |||| ||||| || || |||||||| || |||||||||||||| |
|
|
| T |
10433604 |
aggacttttacgttcaaaggtagatataacagagtggacttcaattttgaacagcaacgtatggaacttatcaaatgataatatt |
10433520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 11130817 - 11130592
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| ||| ||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||||| ||||||| | |||| |||||||| |
|
|
| T |
11130817 |
tggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagataca |
11130718 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||| |||||| | ||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
11130717 |
tggtctttactctcaaagcatgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgtg |
11130618 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaaca |
240 |
Q |
| |
|
||| || || |||||||| |||||| |
|
|
| T |
11130617 |
ctgggttgcccatagctgcaaaaaca |
11130592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 10032456 - 10032596
Alignment:
| Q |
190 |
ggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaa |
289 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||||||||| |||||| | ||||||||| | ||||||||||||| || | ||||||| ||| |
|
|
| T |
10032456 |
ggcaggaagattgcaagaaagtgtggaggattgccaatagctgccaaaacacttggagggcttctacgttcaaaggtagacataacagagtggacttcaa |
10032555 |
T |
|
| Q |
290 |
tcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
| ||||| || |||||||||||| || |||||||||||||| |
|
|
| T |
10032556 |
ttttgaacagcgacatatggaacttatcaaatgataatatt |
10032596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 336
Target Start/End: Original strand, 10517795 - 10518084
Alignment:
| Q |
56 |
aaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaag |
155 |
Q |
| |
|
||||||| |||||||| || || |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||| || |
|
|
| T |
10517795 |
aaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatctcatgaagattgttggtctttactctcaaaacatgcatttggtag |
10517894 |
T |
|
| Q |
156 |
t---ggtggaga------taaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcgga |
246 |
Q |
| |
|
| | | || ||||| |||||| || |||| ||||||| ||||||||| | ||| |||||||| |||||||||||||| |||||| | ||| |
|
|
| T |
10517895 |
taaggacagtgatcacagtaaatacccaaatcttgaagagattggcaggaagattgctaaaaaatgtggtgggttaccaatagctgccaaaacacttgga |
10517994 |
T |
|
| Q |
247 |
gggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatgataatattatgcct |
336 |
Q |
| |
|
|| ||| || |||||||||||| || ||| | |||| || |||| | || || ||||||||||| ||| ||||||||| ||| ||||| |
|
|
| T |
10517995 |
ggacttatgcgttcaaaggtagttgaaaaggagtggtcttcaattctaaacagcaacatatggaacttacgaaatgataaaattttgcct |
10518084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 326
Target Start/End: Original strand, 10077547 - 10077858
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| |||||| || |||||||| | ||||||| |||||||| || | ||||||||||| |||| |||||||||| ||||| ||||||||||| |
|
|
| T |
10077547 |
tggaagcatggtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaacctttatcaaatgaagattgt |
10077646 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatttggaagtggtgg--------aga-taaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
|||| ||| || || ||||||||||| || ||||| | | || | | ||| ||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
10077647 |
tggtatttactttcaaagcatgcattgagagttggtgagtttcaccatagtacaaactcaacccttgaagaaataggcaggaagattgcaagaaagtgtg |
10077746 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacat |
314 |
Q |
| |
|
| ||||| |||||||||||||||||| | ||||| ||| | |||||||||||||| || | |||||| |||| ||||||||| | |||||||| | |
|
|
| T |
10077747 |
gaggattgccaatagctgctaaaacaataggaggacttctaggttcaaaggtagatataatagagtggacaacaattttgaatagtaatgtatggaactt |
10077846 |
T |
|
| Q |
315 |
accaaatgataa |
326 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10077847 |
accaaatgataa |
10077858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 11159809 - 11159675
Alignment:
| Q |
23 |
gtggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattg |
122 |
Q |
| |
|
||||||||| ||| ||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||||| ||||||| | |||| |||||||| |
|
|
| T |
11159809 |
gtggaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatac |
11159710 |
T |
|
| Q |
123 |
ttggtctttgctctctaagcatgcatttggaagtg |
157 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |
|
|
| T |
11159709 |
atggtctttactctcaaagcatgcatttggaagtg |
11159675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 330
Target Start/End: Original strand, 11769512 - 11769827
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| |||||| || |||||||| | |||||| || ||||| || || ||||||||||| ||| |||| ||| ||||||| ||||||||||| |
|
|
| T |
11769512 |
tggaagcatggtgattataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaacttctatcaaatgaagattgt |
11769611 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatttggaagtggtgg--------aga-taaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||| || | | || | | ||| ||| |||| ||| || | |||||||||||||||||||| |
|
|
| T |
11769612 |
tggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagtacaaacacaacccttgaagaaataggaaggaagattgcaagaaagtgtg |
11769711 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacat |
314 |
Q |
| |
|
| ||||| ||||| || |||| |||| | ||||||||| | |||||||||||||| || | |||||||||||| || || | ||||||||||||| | |
|
|
| T |
11769712 |
gaggattgccaattgccgctataacaataggagggcttctacgttcaaaggtagatataacagagtggactgcaattttaaacaatgacatatggaactt |
11769811 |
T |
|
| Q |
315 |
accaaatgataatatt |
330 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
11769812 |
atcaaatgataatatt |
11769827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 13396037 - 13396091
Alignment:
| Q |
285 |
tgcaatcttgaatagtgacatatggaacataccaaatgataatattatgccttct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13396037 |
tgcaatcttgaatagtgacatatggaacataccaaatgataatattatgccttct |
13396091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 10089234 - 10089383
Alignment:
| Q |
181 |
gaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgt |
280 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||| ||||||||||| |||||| | ||||| ||| | ||||||||||||| || | || |
|
|
| T |
10089234 |
gaagcaattggccggaagattgcaaggaagtgtggaggattgccaatagctgccaaaacactaggaggacttctacgttcaaaggtagaaataacagagt |
10089333 |
T |
|
| Q |
281 |
ggactgcaatcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
||||| |||| ||||| || |||||||||||| || |||||||||||||| |
|
|
| T |
10089334 |
ggacttcaattttgaacagcgacatatggaacttatcaaatgataatatt |
10089383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 10261151 - 10261291
Alignment:
| Q |
190 |
ggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaa |
289 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||| | ||||||||||||| || | ||||||| ||| |
|
|
| T |
10261151 |
ggcaggaagattgcaagaaagtgtggaggattgccaatagctgccaaaacacttggaggacttctacgttcaaaggtagacataacagagtggacttcaa |
10261250 |
T |
|
| Q |
290 |
tcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
| ||||| || |||||||||||| || |||||||||||||| |
|
|
| T |
10261251 |
ttttgaacagcgacatatggaacttatcaaatgataatatt |
10261291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 10672135 - 10672275
Alignment:
| Q |
190 |
ggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaa |
289 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || || ||||||| ||| |
|
|
| T |
10672135 |
ggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataactgagtggacttcaa |
10672234 |
T |
|
| Q |
290 |
tcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
| ||||| || ||||||| ||| | | ||||||||||||| |
|
|
| T |
10672235 |
ttttgaacagcaacatatgaaacttgcgaaatgataatatt |
10672275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 330
Target Start/End: Complemental strand, 10363589 - 10363274
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| |||||| || ||||| || | |||||||| || ||||| || || ||||||||||| |||| |||||| | ||||||| ||||||||||| |
|
|
| T |
10363589 |
tggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatcttctatcaaatgaagattgt |
10363490 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatttggaagtggtgg--------aga-taaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
||| |||| ||||| ||||||||| | |||| || || | | || | | ||| ||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
10363489 |
tggactttactctcaaagcatgcactgggaaatgatgagtttcacaatagtacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtg |
10363390 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacat |
314 |
Q |
| |
|
| ||||| ||||| |||||||||||| | ||||| ||| | ||||||||||||| || | ||||||| |||| ||||| || ||||||||||| | |
|
|
| T |
10363389 |
gaggattgccaattgctgctaaaacactaggaggacttctccgttcaaaggtagacataacagagtggacttcaattttgaacagcaacatatggaactt |
10363290 |
T |
|
| Q |
315 |
accaaatgataatatt |
330 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
10363289 |
gcgaaatgataatatt |
10363274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 10375470 - 10375380
Alignment:
| Q |
181 |
gaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatg |
271 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||||| |
|
|
| T |
10375470 |
gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagatg |
10375380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 10089068 - 10089193
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| |||||| || ||||| || | |||||||| || ||||| || || ||||||||||| |||| |||||||| ||| ||| ||||||||||| |
|
|
| T |
10089068 |
tggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttctgtcaaatgaagattgt |
10089167 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatt |
149 |
Q |
| |
|
||| |||| ||||| ||||||||||| |
|
|
| T |
10089168 |
tggactttactctcaaagcatgcatt |
10089193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 326
Target Start/End: Original strand, 10184686 - 10184831
Alignment:
| Q |
181 |
gaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgt |
280 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||| | |||| ||||||||| || | || |
|
|
| T |
10184686 |
gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctaggttcgaaggtagatataatagagt |
10184785 |
T |
|
| Q |
281 |
ggactgcaatcttgaatagtgacatatggaacataccaaatgataa |
326 |
Q |
| |
|
|||| |||| |||||||| | |||||||| ||||||||||||| |
|
|
| T |
10184786 |
ggacaacaattttgaatagcaatgtatggaacttaccaaatgataa |
10184831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 10195951 - 10196076
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| |||||| || ||||| || | |||||||| || ||||| || || ||||||||||| |||| |||||||| ||| ||| ||||||||||| |
|
|
| T |
10195951 |
tggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttctgtcaaatgaagattgt |
10196050 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatt |
149 |
Q |
| |
|
||| |||| ||||| ||||||||||| |
|
|
| T |
10196051 |
tggactttactctcaaagcatgcatt |
10196076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 10127381 - 10127521
Alignment:
| Q |
190 |
ggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaa |
289 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || | ||||||| ||| |
|
|
| T |
10127381 |
ggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacactaggaggacttctacgttcaaaggtagacataacagagtggacttcaa |
10127480 |
T |
|
| Q |
290 |
tcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
| ||||| | ||||||||||| | | ||||||||||||| |
|
|
| T |
10127481 |
ttttgaacaacaacatatggaacttgcgaaatgataatatt |
10127521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 10663979 - 10664119
Alignment:
| Q |
190 |
ggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaa |
289 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || | ||||||| ||| |
|
|
| T |
10663979 |
ggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacattaggaggacttctacgttcaaaggtagacataacagagtggacttcaa |
10664078 |
T |
|
| Q |
290 |
tcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
| ||||| || ||||||||||| | | |||||||||||| |
|
|
| T |
10664079 |
ttttgaacagcaacatatggaacttgcgcaatgataatatt |
10664119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 10663836 - 10663935
Alignment:
| Q |
56 |
aaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaag |
155 |
Q |
| |
|
||||||| || ||||| || || ||||||||||| |||| |||||||| ||||||| |||||||||||||||| || || || ||||||||||| ||||| |
|
|
| T |
10663836 |
aaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtccttactttcaaagcatgcattgggaag |
10663935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 10527817 - 10527951
Alignment:
| Q |
196 |
aagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttga |
295 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||||||||| | ||||| ||| | ||||||||||||| || | ||||||| |||| |||| |
|
|
| T |
10527817 |
aagattgcaagaaagtatggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataacagagtggacttcaattttga |
10527916 |
T |
|
| Q |
296 |
atagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
| || || |||||||| || |||||||||||||| |
|
|
| T |
10527917 |
acagcaacgtatggaacttatcaaatgataatatt |
10527951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 10889583 - 10889809
Alignment:
| Q |
23 |
gtggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattg |
122 |
Q |
| |
|
||||||||| ||| ||||||||||||| | ||||||| ||||||||||| || || | ||||||||| | ||||||| | |||| |||||||| |
|
|
| T |
10889583 |
gtggaagcagggtcgtcatcacaacacgccagcaaaaagttgcagaggttgcacacacgtatcctattcacaaattagaagttttatctaatgaagatac |
10889682 |
T |
|
| Q |
123 |
ttggtctttgctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgt |
213 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||| |||||| | ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
10889683 |
atggtctttactctcaaagcatgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagacagattgcaagaaagtgt |
10889782 |
T |
|
| Q |
214 |
ggtggattaccaatagctgctaaaaca |
240 |
Q |
| |
|
| ||| || || |||||||| |||||| |
|
|
| T |
10889783 |
gctgggttgcccatagctgcaaaaaca |
10889809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 10581045 - 10581133
Alignment:
| Q |
181 |
gaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtaga |
269 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| ||||| |||||||||||||||||| | ||||| ||| | |||||||||||| |
|
|
| T |
10581045 |
gaagaaattggcaggaagattgcaagaaggtgtgggggattgccaatagctgctaaaacactaggaggacttctcccttcaaaggtaga |
10581133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 10527691 - 10527769
Alignment:
| Q |
79 |
acatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaagtg |
157 |
Q |
| |
|
||||||||||| |||| | || ||| | ||||| ||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
10527691 |
acatttcctatacataaactaaaacttttatcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtg |
10527769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 10184520 - 10184645
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||| |||||| || ||||| || | |||||||| || ||||| || || ||||||||||| ||| | || ||| ||||||| ||||||||||| |
|
|
| T |
10184520 |
tggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacatgaactaaaacttctatcaaatgaagattgt |
10184619 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatt |
149 |
Q |
| |
|
||||| || ||||| ||||||||||| |
|
|
| T |
10184620 |
tggtcgttactctcaaagcatgcatt |
10184645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 10580952 - 10581012
Alignment:
| Q |
97 |
ttagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaagtg |
157 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||| || ||||||| ||||||| |
|
|
| T |
10580952 |
ttagaacctctatcaaatgaagattgttggtctttactctcaaactatgcattgggaagtg |
10581012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 10127288 - 10127339
Alignment:
| Q |
106 |
ctatcagatgaagattgttggtctttgctctctaagcatgcatttggaagtg |
157 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| ||||||| |
|
|
| T |
10127288 |
ctatcagatgaagattgttggtctttactatcaaagcatgcattgggaagtg |
10127339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 10032336 - 10032406
Alignment:
| Q |
79 |
acatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatt |
149 |
Q |
| |
|
||||||||||| ||| | || ||| ||||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
10032336 |
acatttcctatacatgaactaaaacttctatcaaatgaagattgttggtctttactctcaaagcatgcatt |
10032406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 11159650 - 11159583
Alignment:
| Q |
173 |
caaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaaca |
240 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| ||| || || |||||||| |||||| |
|
|
| T |
11159650 |
caaacctagaagcaattggtagacagattgcaagaaagtgtgctgggttgcccatagctgcaaaaaca |
11159583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 33 - 330
Target Start/End: Complemental strand, 135670 - 135364
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
135670 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
135571 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg------gtggagataaa---tccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||| ||||||| || ||| || | | |||||| ||||||| |||||| | |||||||| | ||||||||||||||| | |
|
|
| T |
135570 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
135471 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| |||||| |||||||| ||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
135470 |
ccatagctcctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacatatggaacttaccaaatga |
135371 |
T |
|
| Q |
324 |
taatatt |
330 |
Q |
| |
|
||||||| |
|
|
| T |
135370 |
taatatt |
135364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 325
Target Start/End: Complemental strand, 145721 - 145420
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
145721 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
145622 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg------gtggagataaa---tccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||| ||||||| || ||| || | | |||||| ||||||| |||||| | |||||||| | ||||||||||||||| | |
|
|
| T |
145621 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
145522 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
145521 |
ccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacatatggaacttaccaaatga |
145422 |
T |
|
| Q |
324 |
ta |
325 |
Q |
| |
|
|| |
|
|
| T |
145421 |
ta |
145420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 325
Target Start/End: Complemental strand, 154026 - 153725
Alignment:
| Q |
33 |
ggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttg |
132 |
Q |
| |
|
|||||||||||||||||| | ||||||| || |||||||| || || ||||||||||| | | |||| |||||||||||||| || |||||||| || |
|
|
| T |
154026 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
153927 |
T |
|
| Q |
133 |
ctctctaagcatgcatttggaagtg------gtggagataaa---tccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattac |
223 |
Q |
| |
|
|| || ||||||||||| ||||||| || ||| || | | |||||| ||||||| |||||| | |||||||| | ||||||||||||||| | |
|
|
| T |
153926 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
153827 |
T |
|
| Q |
224 |
caatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatga |
323 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
153826 |
ccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacatatggaacttaccaaatga |
153727 |
T |
|
| Q |
324 |
ta |
325 |
Q |
| |
|
|| |
|
|
| T |
153726 |
ta |
153725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 325
Target Start/End: Complemental strand, 44957476 - 44957170
Alignment:
| Q |
27 |
aagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttgg |
126 |
Q |
| |
|
||||||||| ||||| ||||||||| | |||| || ||||||||||| || |||||||| ||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
44957476 |
aagcaaggtcatcataacaacacgtgaacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatgaagattgttgg |
44957377 |
T |
|
| Q |
127 |
tctttgctctctaagcatgcatttg-----gaa----gtggtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtg |
217 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||| | || | ||| |||||||||||||| ||||||| ||||||||| | ||| ||||||| |
|
|
| T |
44957376 |
tctttactctcaaagcatgcatttgacagcgaagaccgtgttcaaggt-aatacccaaacctagaagagattggcaggaagattgctaaaaaatgtggtg |
44957278 |
T |
|
| Q |
218 |
gattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacatacc |
317 |
Q |
| |
|
|||| ||||||||||| |||||| | ||||| ||| || |||||||| ||| || ||| | ||||||| |||| ||||||| |||||||||||| || |
|
|
| T |
44957277 |
gattgccaatagctgccaaaacactgggaggacttatgcgttcaaagatagttgaaaaggagtggacttcaattctgaatagcgacatatggaactaacg |
44957178 |
T |
|
| Q |
318 |
aaatgata |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
44957177 |
aaatgata |
44957170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 325
Target Start/End: Original strand, 11485319 - 11485626
Alignment:
| Q |
27 |
aagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttgg |
126 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||| |||||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
11485319 |
aagcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaacctctatctgatgaagattgttgg |
11485418 |
T |
|
| Q |
127 |
tctttgctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtggtg |
217 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| | | | ||||| |||||||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
11485419 |
tctttactctcgaagcatgcatttggcggtgaagaatttcttcggggtaaatacccaaacctagaagagattggcaggaagattgctagaaagtgtggtg |
11485518 |
T |
|
| Q |
218 |
gattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacatacc |
317 |
Q |
| |
|
|||| ||||| ||||| ||| || | ||||| || || ||||||||||| || ||| | ||||||| |||| || |||| |||||||||||| || |
|
|
| T |
11485519 |
gattgccaattgctgcaaaagcacttggaggactaatgcattcaaaggtagttgaaaaggagtggactacaattctgcatagcgacatatggaacttaaa |
11485618 |
T |
|
| Q |
318 |
aaatgata |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
11485619 |
aaatgata |
11485626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 327
Target Start/End: Complemental strand, 31679524 - 31679212
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||| | |||||| |||||||||||| | ||||||| || ||| | | ||||| |||||||| ||| ||||||||||||||||||||| ||||| |
|
|
| T |
31679524 |
tggaagtagggtgattatcacaacacgtcaataaaaagttgccgagttcacccatacctttcctatctataaattagaacctctatcagatgatgattgc |
31679425 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatttggaagtg---------gtggagataaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||| ||||| ||||| ||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
31679424 |
tggtctttactctcaaagcatgcatttggaagtgaagaactttgtggccgtaaatacccaagcctagaagcaattggtaggaagattgcaaaaaagtgtt |
31679325 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacat |
314 |
Q |
| |
|
| ||||| ||||||||||| |||||| | ||||| ||| | | ||||| || ||||| || | ||||| |||||| || || | |||||||||||| | |
|
|
| T |
31679324 |
gcggattgccaatagctgccaaaacacttggaggacttctacgctcaaaagtggatgcgaaagagtggagtgcaattttaaacaatgacatatggaattt |
31679225 |
T |
|
| Q |
315 |
accaaatgataat |
327 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31679224 |
tccaaatgataat |
31679212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 326
Target Start/End: Complemental strand, 17852714 - 17852403
Alignment:
| Q |
24 |
tggaagcaaggtgatcatcacaacacgtaatgaaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgt |
123 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||| || |||||||| | |||||||| ||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
17852714 |
tggaagcaaggtcatcataacaacacgcctaaaaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatgaagattgt |
17852615 |
T |
|
| Q |
124 |
tggtctttgctctctaagcatgcatttggaagtg------gtggaga---taaatccccaaacctagaagcaattggcatgaagattgcaagaaagtgtg |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||| | ||||| | |||| ||||||||||||||| |||||| | |||||||||| |
|
|
| T |
17852614 |
tggtctttgctctcaaagcatgcatttggaggtgaagaccttggtcacagtaaatactcaaatttagaagcaattggcaggaagatatctagaaagtgtg |
17852515 |
T |
|
| Q |
215 |
gtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgcaaatgtgtggactgcaatcttgaatagtgacatatggaacat |
314 |
Q |
| |
|
||| || ||||||||||| ||| || |||| || || || | || |||||||||| ||||| |||||||||||| ||||||| || |||||| | | |
|
|
| T |
17852514 |
atggcttgccaatagctgccaaagcactcggtggactaatgcgctcgaaggtagatgaaaatgagtggactgcaattctgaatagcgatatatggcaatt |
17852415 |
T |
|
| Q |
315 |
accaaatgataa |
326 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
17852414 |
acaaaatgataa |
17852403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 26907207 - 26907307
Alignment:
| Q |
56 |
aaaaagtcgcagaggttgctcatacatttcctattcatagattagaacctctatcagatgaagattgttggtctttgctctctaagcatgcatttggaag |
155 |
Q |
| |
|
||||||| |||||||| || |||||||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
26907207 |
aaaaagttgcagaggtggcacatacatttcctatacataaattagaacctctatcaactgaagattgttggtctttactctcaaagcatgcattgggaag |
26907306 |
T |
|
| Q |
156 |
t |
156 |
Q |
| |
|
| |
|
|
| T |
26907307 |
t |
26907307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 330
Target Start/End: Original strand, 26907333 - 26907490
Alignment:
| Q |
173 |
caaacctagaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtagatgc |
272 |
Q |
| |
|
||| ||| |||| |||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||| | ||||| || | ||||||||||||| |
|
|
| T |
26907333 |
caaccctcgaagaaattggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacactaggaggaattctacgttcaaaggtagacat |
26907432 |
T |
|
| Q |
273 |
aaatgtgtggactgcaatcttgaatagtgacatatggaacataccaaatgataatatt |
330 |
Q |
| |
|
|| | ||||||| |||| ||||| | ||| |||||||| ||| ||||||||||||| |
|
|
| T |
26907433 |
aacagagtggacttcaattttgaacaacgacgtatggaacttacgaaatgataatatt |
26907490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 58045 - 57957
Alignment:
| Q |
181 |
gaagcaattggcatgaagattgcaagaaagtgtggtggattaccaatagctgctaaaacagtcggagggcttttgagttcaaaggtaga |
269 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| ||||| |||||||||||||||||| | ||||| ||| | |||||||||||| |
|
|
| T |
58045 |
gaagaaattggcaggaagattgcaagaaggtgtgggggattgccaatagctgctaaaacactaggaggacttctcctttcaaaggtaga |
57957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University