View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_high_3 (Length: 351)
Name: NF10353_high_3
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 33345404 - 33345737
Alignment:
| Q |
1 |
cttgtaagttcaatggaattctttgtggcatattcccaaatacaaaggaccgagcagttgctggattagacttcaaccagaaaaaattccaaggtaaaaa |
100 |
Q |
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| T |
33345404 |
cttgtaacttccatggaattctttgtggcatattcccaaatacaaatgaccgagcagttgctggattagacttcaaccagaaaaaattccaaggtaaaaa |
33345503 |
T |
|
| Q |
101 |
ctgtgacactatacccttaaaaggtatcttagaccaaatagaagagttaacattcttccacgtaaattccaacagtttctctggttcaataccaaaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33345504 |
ctgtgacactatacccttaaaaggtatcttagaccaaatagaagagttaacattcttccacgtaaattccaacagtttctatggttcaataccaaaagaa |
33345603 |
T |
|
| Q |
201 |
atcacgaactataaatatttctacgaacttgacctcagtaacaacaaacttgtgggagaatttccacaagaagttcttgattctaaacaactagtttttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33345604 |
atcacgaactataaatatttctacgaacttgacctcagtaacaacaaacttgtaggagaatttccaaaagaagttcttgattctaaacaactagtttttc |
33345703 |
T |
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| Q |
301 |
tagacctcaggtttaatcaactcaccggttcagt |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33345704 |
tagacctcaggtttaatcaactcaccggttcagt |
33345737 |
T |
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