View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_high_4 (Length: 350)
Name: NF10353_high_4
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_high_4 |
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| [»] scaffold0179 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 894284 - 894383
Alignment:
| Q |
210 |
gcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagtgctttgttaccaccagggatcccctca |
309 |
Q |
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| T |
894284 |
gcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagtcatttgttaccaccagggatcccctca |
894383 |
T |
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Target: scaffold0179 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 215 - 327
Target Start/End: Complemental strand, 6436 - 6319
Alignment:
| Q |
215 |
agagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagtgc-----tttgttaccaccagggatcccctca |
309 |
Q |
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| T |
6436 |
agagaagaaataagatataattttaccacaatattgcaatggtagtggaatccaacaaccatgaaagtgctttaatttgttaccaccagggatcccctct |
6337 |
T |
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| Q |
310 |
tccccgttccctcaacct |
327 |
Q |
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| T |
6336 |
tccccgttccctcaacct |
6319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 6570 - 6462
Alignment:
| Q |
78 |
ttttcagggtgttgagagtggtggattcattgatagagtctataaaaagattagtaagcgaaaaggagaagnnnnnnnnttatcctagaggagaaaggag |
177 |
Q |
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| T |
6570 |
ttttgagggtgttgagagtggtggattcattcatagagtctataaaaagattaataagcgaaaaggagaaggaaaaaaaatatcctagaggagaaaggag |
6471 |
T |
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| Q |
178 |
aggaatgga |
186 |
Q |
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| T |
6470 |
agggatgga |
6462 |
T |
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