View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10353_high_6 (Length: 329)
Name: NF10353_high_6
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 563686 - 564001
Alignment:
| Q |
1 |
aatggttgcattcattctctgctcagcaaaaagtggccaagctactattggcaccccattaacaacacactcaagtgtagaaaaccaaccacaatgtgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
563686 |
aatggttgcattcattctctgctcagcaaaaagtggccaagctactattggcaccccatttacaacacactcaagtgtagaaaaccaaccacaatgtgta |
563785 |
T |
|
| Q |
101 |
acaaatccacctatagctttgtgactaagaatctcaacttgtggtgcccaatttgaaaccaaaaatccttgcttatttgttctttctaagaacccttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
563786 |
acaaatccacctatagctttgtgactaagaatctcaacttgtggtgcccaatttgaaaccaaaaatccttgcttatttgttctttctaagaacccttttg |
563885 |
T |
|
| Q |
201 |
gtaaaaaactcaaagggtcttttttagaattagaaacatcaaaataaatagcactagctatatcatttggttctctcataacccaaagaaacttttgact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
563886 |
gtaaaaaactcaaagggtcttttttagaattagaaacatcaaaataaatagcactagctatatcatttggttctctcacaacccaaagaaacttttgact |
563985 |
T |
|
| Q |
301 |
actcaattctaaccct |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
563986 |
actcaattctaaccct |
564001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 3770134 - 3770238
Alignment:
| Q |
8 |
gcattcattctctgctcagcaaaaagtggccaagctactattggcaccccattaacaacacactcaagtgtagaaaaccaaccacaatgtgtaacaaatc |
107 |
Q |
| |
|
||||||||||| || ||| |||| | |||||||| ||| |||||||| || |||| || ||||||||| ||| ||||||||||||||| | ||||| |
|
|
| T |
3770134 |
gcattcattctttgatcaccaaacaatggccaagttaccattggcactcccgacacaatactctcaagtgttgaattccaaccacaatgtgttaaaaatc |
3770233 |
T |
|
| Q |
108 |
cacct |
112 |
Q |
| |
|
||||| |
|
|
| T |
3770234 |
cacct |
3770238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 844965 - 845094
Alignment:
| Q |
23 |
tcagcaaaaagtggccaagctactattggcaccccattaacaacacactcaagtgtagaaaaccaaccacaatgtgtaacaaatccacctatagctttgt |
122 |
Q |
| |
|
|||||||| |||||||| |||| |||||| | ||||| ||||||| |||||||| ||| |||||||||||| || | ||| ||||| || | | | |
|
|
| T |
844965 |
tcagcaaagagtggccatgctattattggaattccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaactat |
845064 |
T |
|
| Q |
123 |
gactaagaatctcaacttgtggtgcccaat |
152 |
Q |
| |
|
||| |||||| |||| |||||||||||||| |
|
|
| T |
845065 |
gaccaagaatttcaatttgtggtgcccaat |
845094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 870249 - 870378
Alignment:
| Q |
23 |
tcagcaaaaagtggccaagctactattggcaccccattaacaacacactcaagtgtagaaaaccaaccacaatgtgtaacaaatccacctatagctttgt |
122 |
Q |
| |
|
|||||||| |||||||| |||| |||||| | ||||| ||||||| |||||||| ||| |||||||||||| || | ||| ||||| || | | | |
|
|
| T |
870249 |
tcagcaaagagtggccatgctattattggaattccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaactat |
870348 |
T |
|
| Q |
123 |
gactaagaatctcaacttgtggtgcccaat |
152 |
Q |
| |
|
||| |||||| |||| |||||||||||||| |
|
|
| T |
870349 |
gaccaagaatttcaatttgtggtgcccaat |
870378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University