View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10353_low_1 (Length: 632)
Name: NF10353_low_1
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 25 - 617
Target Start/End: Original strand, 7739297 - 7739889
Alignment:
| Q |
25 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739297 |
cacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactggga |
7739396 |
T |
|
| Q |
125 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
224 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7739397 |
aagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtg |
7739496 |
T |
|
| Q |
225 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgttgaaagagttaggaataggcccagttactttgggcattt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7739497 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagttactttgggcattt |
7739596 |
T |
|
| Q |
325 |
cggccaatgagaggaagttaagatatggaaggtcgccaaagtccgctggtagcataccggaaagaccccagccacggctgattgtgacaacggtgattcg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
7739597 |
cggccaatgagaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcg |
7739696 |
T |
|
| Q |
425 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
524 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739697 |
gccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
7739796 |
T |
|
| Q |
525 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739797 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
7739889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 25 - 617
Target Start/End: Original strand, 7726979 - 7727571
Alignment:
| Q |
25 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
7726979 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcga |
7727078 |
T |
|
| Q |
125 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
224 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
7727079 |
aagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7727178 |
T |
|
| Q |
225 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgttgaaagagttaggaataggcccagttactttgggcattt |
324 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| || || || |||||||||||||||| |
|
|
| T |
7727179 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccggttactttgggcattt |
7727278 |
T |
|
| Q |
325 |
cggccaatgagaggaagttaagatatggaaggtcgccaaagtccgctggtagcataccggaaagaccccagccacggctgattgtgacaacggtgattcg |
424 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||| || ||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
7727279 |
cagccaatgagaggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcg |
7727378 |
T |
|
| Q |
425 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7727379 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtactgttgtcccaatcggagaggcggccgttggggccgccgaaatgg |
7727478 |
T |
|
| Q |
525 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
617 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727479 |
tctctgattttgaggagagtggctttgtcattggcattgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
7727571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 25 - 617
Target Start/End: Original strand, 7731139 - 7731731
Alignment:
| Q |
25 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
7731139 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcga |
7731238 |
T |
|
| Q |
125 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
224 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
7731239 |
aagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7731338 |
T |
|
| Q |
225 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgttgaaagagttaggaataggcccagttactttgggcattt |
324 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
7731339 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagttactttcggcattt |
7731438 |
T |
|
| Q |
325 |
cggccaatgagaggaagttaagatatggaaggtcgccaaagtccgctggtagcataccggaaagaccccagccacggctgattgtgacaacggtgattcg |
424 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||| || |||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
7731439 |
cggctaatgagaggaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcg |
7731538 |
T |
|
| Q |
425 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
524 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731539 |
gccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
7731638 |
T |
|
| Q |
525 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731639 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
7731731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 617
Target Start/End: Original strand, 7699117 - 7699703
Alignment:
| Q |
25 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
124 |
Q |
| |
|
|||| |||||||||||||| |||||| | |||| |||||| |||||||||| ||| || |||||||| || ||||||||||| || |||||||| || |
|
|
| T |
7699117 |
cacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcga |
7699216 |
T |
|
| Q |
125 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
224 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||| |||| |||||| |||||||||||||||| ||||| || || |||||| | |||||| || | | |
|
|
| T |
7699217 |
aagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggag |
7699316 |
T |
|
| Q |
225 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgttgaaagagttaggaataggcccagttactttgggcattt |
324 |
Q |
| |
|
||||| | ||||||||| ||||||||||||||||| || ||||||||||||||||||||| | ||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
7699317 |
gggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaagagttagggattggcccagttactttcggcattt |
7699416 |
T |
|
| Q |
325 |
cggccaatgagaggaagttaagatatggaaggtcgccaaagtccgctggtagcataccggaaagaccccagccacggctgattgtgacaacggtgattcg |
424 |
Q |
| |
|
||||||||||||| | | ||||||| || |||| |||||| |||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
7699417 |
cggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcg |
7699516 |
T |
|
| Q |
425 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
524 |
Q |
| |
|
|||||| ||| |||| || ||||||||||||||||| |||||| || || ||||||||| ||| |||||||| ||||| || ||||||||| |
|
|
| T |
7699517 |
gccaggataaggtctgccgcaaccgacgaagctccagtc---acaacattcggtgttgttgtcccagtcgtcgaggcggcctttgggaccaccgaaatgg |
7699613 |
T |
|
| Q |
525 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
617 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||| |||| | ||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
7699614 |
tctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt---catcacttgcgtttgatttggagaagtagatggaagaaagg |
7699703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 25 - 617
Target Start/End: Original strand, 7713462 - 7714048
Alignment:
| Q |
25 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
124 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||| || || ||||| || |
|
|
| T |
7713462 |
cacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcga |
7713561 |
T |
|
| Q |
125 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
224 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||| |||||| |||||| ||||| |||||||||| ||| || | || |||||| | ||| || || |
|
|
| T |
7713562 |
aagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattca |
7713661 |
T |
|
| Q |
225 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgttgaaagagttaggaataggcccagttactttgggcattt |
324 |
Q |
| |
|
||||| | ||||||||| |||||||| ||||||||||| |||| |||||||| ||||||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
7713662 |
gggattggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagttactttcggcattt |
7713761 |
T |
|
| Q |
325 |
cggccaatgagaggaagttaagatatggaaggtcgccaaagtccgctggtagcataccggaaagaccccagccacggctgattgtgacaacggtgattcg |
424 |
Q |
| |
|
||||||||||||| | | ||||||| || ||||||||||| |||||||| || |||||||||||||||||||||||| ||| ||||| |||||| ||| |
|
|
| T |
7713762 |
cggccaatgagagcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcg |
7713861 |
T |
|
| Q |
425 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatgg |
524 |
Q |
| |
|
|||||| ||| |||| || || |||||| ||||||| |||||| || || ||||||||| ||| ||| |||||||| |||||||| |||||| |
|
|
| T |
7713862 |
gccaggataaggtctgccgcaacctacgaagttccagtc---acaacattcagtgttgttgtcccagtcgtcaagacggccgttagggccgccaaaatgg |
7713958 |
T |
|
| Q |
525 |
tctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcatttgatgtggagaagtagatggaagaaagg |
617 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||| |||| | ||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
7713959 |
tctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt---catcacttgcgtttgatttggagaagtagatggaagaaagg |
7714048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 25 - 312
Target Start/End: Complemental strand, 12908357 - 12908070
Alignment:
| Q |
25 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
124 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||| |||||| |||| || || |||||||| |
|
|
| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
|
| Q |
125 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
224 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||||||||||| |||||| |||||||||||||||| ||| | ||||| |||||| |||||||||| ||| |
|
|
| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
|
| Q |
225 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgttgaaagagttaggaataggcccagtta |
312 |
Q |
| |
|
||||||| |||||||| ||||||| ||| | ||| || | | | ||| ||||||| ||||||||||||| || |||||||||| |
|
|
| T |
12908157 |
gggatcgggccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
12908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 568
Target Start/End: Complemental strand, 12907901 - 12907799
Alignment:
| Q |
466 |
tacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgca |
565 |
Q |
| |
|
|||||||||||| | | ||| ||| ||||| ||| | ||||| |||||||||||||||||||| ||||||||||| | ||||| ||||||| || ||| |
|
|
| T |
12907901 |
tacaacagtctgcattggtgtgccagtcggataggggtccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggca |
12907802 |
T |
|
| Q |
566 |
gga |
568 |
Q |
| |
|
||| |
|
|
| T |
12907801 |
gga |
12907799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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