View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10353_low_13 (Length: 336)

Name: NF10353_low_13
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10353_low_13
NF10353_low_13
[»] chr4 (9 HSPs)
chr4 (1-277)||(56364836-56365114)
chr4 (305-336)||(24100567-24100598)
chr4 (305-336)||(29576791-29576822)
chr4 (305-336)||(38943813-38943844)
chr4 (305-336)||(44374945-44374976)
chr4 (305-336)||(46716564-46716595)
chr4 (305-336)||(52555421-52555452)
chr4 (305-336)||(56236487-56236518)
chr4 (308-336)||(24611457-24611485)
[»] chr8 (15 HSPs)
chr8 (301-336)||(7014139-7014174)
chr8 (305-336)||(5457484-5457515)
chr8 (305-336)||(6314927-6314958)
chr8 (305-336)||(6833751-6833782)
chr8 (305-336)||(8054478-8054509)
chr8 (305-336)||(9799681-9799712)
chr8 (305-336)||(28296779-28296810)
chr8 (305-336)||(31712744-31712775)
chr8 (305-336)||(32413203-32413234)
chr8 (300-336)||(2968949-2968985)
chr8 (305-333)||(4429485-4429513)
chr8 (308-336)||(7579522-7579550)
chr8 (304-332)||(10043193-10043221)
chr8 (305-333)||(12248381-12248409)
chr8 (305-333)||(37659276-37659304)
[»] scaffold0012 (1 HSPs)
scaffold0012 (305-336)||(245042-245073)
[»] chr7 (8 HSPs)
chr7 (305-336)||(10574799-10574830)
chr7 (305-336)||(15123673-15123704)
chr7 (305-336)||(26017328-26017359)
chr7 (305-336)||(30992494-30992525)
chr7 (305-336)||(32312934-32312965)
chr7 (305-336)||(34893520-34893551)
chr7 (305-336)||(39090501-39090532)
chr7 (305-336)||(43847407-43847438)
[»] chr6 (3 HSPs)
chr6 (305-336)||(5545093-5545124)
chr6 (305-336)||(14731039-14731070)
chr6 (305-336)||(20496606-20496637)
[»] chr5 (9 HSPs)
chr5 (305-336)||(4726673-4726704)
chr5 (305-336)||(5378715-5378746)
chr5 (305-336)||(15710957-15710988)
chr5 (305-336)||(17218136-17218167)
chr5 (305-336)||(28423706-28423737)
chr5 (305-336)||(34866845-34866876)
chr5 (305-336)||(40775174-40775205)
chr5 (305-335)||(6647579-6647609)
chr5 (308-336)||(12628193-12628221)
[»] chr3 (8 HSPs)
chr3 (305-336)||(4020011-4020042)
chr3 (305-336)||(36623927-36623958)
chr3 (305-336)||(45047931-45047962)
chr3 (305-336)||(48652113-48652144)
chr3 (305-336)||(54240486-54240517)
chr3 (305-334)||(11846963-11846992)
chr3 (307-336)||(25939168-25939197)
chr3 (305-334)||(42167725-42167754)
[»] chr2 (13 HSPs)
chr2 (305-336)||(4878404-4878435)
chr2 (305-336)||(11550336-11550367)
chr2 (305-336)||(11931285-11931316)
chr2 (305-336)||(13268985-13269016)
chr2 (305-336)||(15920287-15920318)
chr2 (305-336)||(18141151-18141182)
chr2 (301-336)||(25236997-25237032)
chr2 (305-336)||(34962651-34962682)
chr2 (305-336)||(38534961-38534992)
chr2 (305-336)||(40125798-40125829)
chr2 (305-336)||(44149700-44149731)
chr2 (306-336)||(23256302-23256332)
chr2 (308-336)||(12366281-12366309)
[»] chr1 (11 HSPs)
chr1 (305-336)||(8893705-8893736)
chr1 (305-336)||(11121389-11121420)
chr1 (305-336)||(12967403-12967434)
chr1 (305-336)||(13969310-13969341)
chr1 (305-336)||(26771519-26771550)
chr1 (305-336)||(34659311-34659342)
chr1 (305-336)||(38646997-38647028)
chr1 (305-336)||(46589561-46589592)
chr1 (305-336)||(49652248-49652279)
chr1 (305-335)||(12971783-12971813)
chr1 (305-333)||(35069711-35069739)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 56364836 - 56365114
Alignment:
Q  1 cccctacaaattataaaaaattctaagttta--cccttttgttatttaacttcaccgctacaaaatatataagataaatattatcagaaattgtatgttt 98  Q
    |||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56364836 cccctacagattataaaaaattctaagttttatcccttttgttatttaacttcaccgctacaaaatatataagataaatattatcagaaattgtatgttt 56364935  T
Q  99 tgtatatcctgcaaactcatcgagacttaatcttgaactaaggaaatcttccatgatcattggatggaattaaccaatcatgtctgctgatcgatggact 198  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  56364936 tgtgtatcctgcaaactcattgagacttaatcttgaactaaggaaatcttccatgatcattggatggaattaaccaatcatgtatgctgatcgatggatt 56365035  T
Q  199 ggagaaaaatgtgaacgagaacaaacaggttgctaaatacaatacgttattgagggggaaattgagtacatcggtgcaa 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56365036 ggagaaaaatgtgaacgagaacaaacaggttgctaaatacaatacgttattgagggggaaattgagtacatcggtgcaa 56365114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 24100598 - 24100567
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  24100598 aaataaatgatattcattcattcaaattgata 24100567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 29576791 - 29576822
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  29576791 aaataaatgatattcattcattcaaattgata 29576822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 38943813 - 38943844
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  38943813 aaataaatgatattcattcattcaaattgata 38943844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 44374945 - 44374976
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  44374945 aaataaatgatattcattcattcaaattgata 44374976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 46716564 - 46716595
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  46716564 aaataaatgatattcattcattcaaattgata 46716595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 52555421 - 52555452
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  52555421 aaataaatgatattcattcattcaaattgata 52555452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 56236487 - 56236518
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  56236487 aaataaatgatattcattcattcaaattgata 56236518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 24611457 - 24611485
Alignment:
Q  308 taaatgatattcattcattcaaattgata 336  Q
    |||||||||||||||||||||||||||||    
T  24611457 taaatgatattcattcattcaaattgata 24611485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 7014139 - 7014174
Alignment:
Q  301 aaataaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  7014139 aaataaataaatgatattcattcattcaaattgata 7014174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 5457515 - 5457484
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  5457515 aaataaatgatattcattcattcaaattgata 5457484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 6314958 - 6314927
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  6314958 aaataaatgatattcattcattcaaattgata 6314927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 6833782 - 6833751
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  6833782 aaataaatgatattcattcattcaaattgata 6833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 8054478 - 8054509
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  8054478 aaataaatgatattcattcattcaaattgata 8054509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 9799681 - 9799712
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  9799681 aaataaatgatattcattcattcaaattgata 9799712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 28296779 - 28296810
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  28296779 aaataaatgatattcattcattcaaattgata 28296810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 31712744 - 31712775
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  31712744 aaataaatgatattcattcattcaaattgata 31712775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 32413234 - 32413203
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  32413234 aaataaatgatattcattcattcaaattgata 32413203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 2968985 - 2968949
Alignment:
Q  300 caaataaataaatgatattcattcattcaaattgata 336  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  2968985 caaaaaaataaacgatattcattcattcaaattgata 2968949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 4429513 - 4429485
Alignment:
Q  305 aaataaatgatattcattcattcaaattg 333  Q
    |||||||||||||||||||||||||||||    
T  4429513 aaataaatgatattcattcattcaaattg 4429485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 7579522 - 7579550
Alignment:
Q  308 taaatgatattcattcattcaaattgata 336  Q
    |||||||||||||||||||||||||||||    
T  7579522 taaatgatattcattcattcaaattgata 7579550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Complemental strand, 10043221 - 10043193
Alignment:
Q  304 taaataaatgatattcattcattcaaatt 332  Q
    |||||||||||||||||||||||||||||    
T  10043221 taaataaatgatattcattcattcaaatt 10043193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 12248381 - 12248409
Alignment:
Q  305 aaataaatgatattcattcattcaaattg 333  Q
    |||||||||||||||||||||||||||||    
T  12248381 aaataaatgatattcattcattcaaattg 12248409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 37659304 - 37659276
Alignment:
Q  305 aaataaatgatattcattcattcaaattg 333  Q
    |||||||||||||||||||||||||||||    
T  37659304 aaataaatgatattcattcattcaaattg 37659276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 245073 - 245042
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  245073 aaataaatgatattcattcattcaaattgata 245042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 10574830 - 10574799
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  10574830 aaataaatgatattcattcattcaaattgata 10574799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 15123673 - 15123704
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  15123673 aaataaatgatattcattcattcaaattgata 15123704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 26017328 - 26017359
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  26017328 aaataaatgatattcattcattcaaattgata 26017359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 30992494 - 30992525
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  30992494 aaataaatgatattcattcattcaaattgata 30992525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 32312965 - 32312934
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  32312965 aaataaatgatattcattcattcaaattgata 32312934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 34893551 - 34893520
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  34893551 aaataaatgatattcattcattcaaattgata 34893520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 39090532 - 39090501
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  39090532 aaataaatgatattcattcattcaaattgata 39090501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 43847438 - 43847407
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  43847438 aaataaatgatattcattcattcaaattgata 43847407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 5545124 - 5545093
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  5545124 aaataaatgatattcattcattcaaattgata 5545093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 14731070 - 14731039
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  14731070 aaataaatgatattcattcattcaaattgata 14731039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 20496637 - 20496606
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  20496637 aaataaatgatattcattcattcaaattgata 20496606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 4726673 - 4726704
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  4726673 aaataaatgatattcattcattcaaattgata 4726704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 5378746 - 5378715
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  5378746 aaataaatgatattcattcattcaaattgata 5378715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 15710988 - 15710957
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  15710988 aaataaatgatattcattcattcaaattgata 15710957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 17218167 - 17218136
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  17218167 aaataaatgatattcattcattcaaattgata 17218136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 28423706 - 28423737
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  28423706 aaataaatgatattcattcattcaaattgata 28423737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 34866876 - 34866845
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  34866876 aaataaatgatattcattcattcaaattgata 34866845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 40775205 - 40775174
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  40775205 aaataaatgatattcattcattcaaattgata 40775174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 6647579 - 6647609
Alignment:
Q  305 aaataaatgatattcattcattcaaattgat 335  Q
    |||||||||||||||||||||||||||||||    
T  6647579 aaataaatgatattcattcattcaaattgat 6647609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 12628193 - 12628221
Alignment:
Q  308 taaatgatattcattcattcaaattgata 336  Q
    |||||||||||||||||||||||||||||    
T  12628193 taaatgatattcattcattcaaattgata 12628221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 4020042 - 4020011
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  4020042 aaataaatgatattcattcattcaaattgata 4020011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 36623927 - 36623958
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  36623927 aaataaatgatattcattcattcaaattgata 36623958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 45047962 - 45047931
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  45047962 aaataaatgatattcattcattcaaattgata 45047931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 48652113 - 48652144
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  48652113 aaataaatgatattcattcattcaaattgata 48652144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 54240517 - 54240486
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  54240517 aaataaatgatattcattcattcaaattgata 54240486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 11846992 - 11846963
Alignment:
Q  305 aaataaatgatattcattcattcaaattga 334  Q
    ||||||||||||||||||||||||||||||    
T  11846992 aaataaatgatattcattcattcaaattga 11846963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 25939168 - 25939197
Alignment:
Q  307 ataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||    
T  25939168 ataaatgatattcattcattcaaattgata 25939197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 42167725 - 42167754
Alignment:
Q  305 aaataaatgatattcattcattcaaattga 334  Q
    ||||||||||||||||||||||||||||||    
T  42167725 aaataaatgatattcattcattcaaattga 42167754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 4878404 - 4878435
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  4878404 aaataaatgatattcattcattcaaattgata 4878435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 11550336 - 11550367
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  11550336 aaataaatgatattcattcattcaaattgata 11550367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 11931316 - 11931285
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  11931316 aaataaatgatattcattcattcaaattgata 11931285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 13269016 - 13268985
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  13269016 aaataaatgatattcattcattcaaattgata 13268985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 15920318 - 15920287
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  15920318 aaataaatgatattcattcattcaaattgata 15920287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 18141151 - 18141182
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  18141151 aaataaatgatattcattcattcaaattgata 18141182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 25236997 - 25237032
Alignment:
Q  301 aaataaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25236997 aaataaataaatgatattctttcattcaaattgata 25237032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 34962651 - 34962682
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  34962651 aaataaatgatattcattcattcaaattgata 34962682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 38534961 - 38534992
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  38534961 aaataaatgatattcattcattcaaattgata 38534992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 40125829 - 40125798
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  40125829 aaataaatgatattcattcattcaaattgata 40125798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 44149700 - 44149731
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  44149700 aaataaatgatattcattcattcaaattgata 44149731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 23256302 - 23256332
Alignment:
Q  306 aataaatgatattcattcattcaaattgata 336  Q
    |||||||||||||||||||||||||||||||    
T  23256302 aataaatgatattcattcattcaaattgata 23256332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 12366309 - 12366281
Alignment:
Q  308 taaatgatattcattcattcaaattgata 336  Q
    |||||||||||||||||||||||||||||    
T  12366309 taaatgatattcattcattcaaattgata 12366281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 8893736 - 8893705
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  8893736 aaataaatgatattcattcattcaaattgata 8893705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 11121420 - 11121389
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  11121420 aaataaatgatattcattcattcaaattgata 11121389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 12967403 - 12967434
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  12967403 aaataaatgatattcattcattcaaattgata 12967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 13969310 - 13969341
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  13969310 aaataaatgatattcattcattcaaattgata 13969341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 26771550 - 26771519
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  26771550 aaataaatgatattcattcattcaaattgata 26771519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 34659311 - 34659342
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  34659311 aaataaatgatattcattcattcaaattgata 34659342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 38647028 - 38646997
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  38647028 aaataaatgatattcattcattcaaattgata 38646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 46589592 - 46589561
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  46589592 aaataaatgatattcattcattcaaattgata 46589561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 49652279 - 49652248
Alignment:
Q  305 aaataaatgatattcattcattcaaattgata 336  Q
    ||||||||||||||||||||||||||||||||    
T  49652279 aaataaatgatattcattcattcaaattgata 49652248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 12971813 - 12971783
Alignment:
Q  305 aaataaatgatattcattcattcaaattgat 335  Q
    |||||||||||||||||||||||||||||||    
T  12971813 aaataaatgatattcattcattcaaattgat 12971783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 35069711 - 35069739
Alignment:
Q  305 aaataaatgatattcattcattcaaattg 333  Q
    |||||||||||||||||||||||||||||    
T  35069711 aaataaatgatattcattcattcaaattg 35069739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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