View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10353_low_17 (Length: 321)

Name: NF10353_low_17
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10353_low_17
NF10353_low_17
[»] chr1 (1 HSPs)
chr1 (3-321)||(7804296-7804615)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 7804615 - 7804296
Alignment:
Q  3 aaaaagtgtaaaaaagagatcgagtgagtgagtgaatctatgggatcacacatagaggaaattatgtagagaatacgagtaaatgggtgtagaagatcta 102  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||    
T  7804615 aaaaagtgtaacaaagagatcgagtgagtgagtgaatctatgagatcaaacattgaggaaattacgtagagaatacgagtaaatgggtgttgaagatcta 7804516  T
Q  103 aacacatgaatttttaatgtagaagctcaacattactttccatcgtagagaaactaaaaataattacatgtcactgtatactttgttatacaa-gtttga 201  Q
    ||||| ||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  7804515 aacacgtgaatttcttatgtagaagttcaacattattttccatcgtagagaaactaaaaataattacatgtcactatatactttgttatacaatgtttga 7804416  T
Q  202 attacattttcattggcaagcattttgatgtaattgcatatcaattgatatttctaatcatgttttacttttaaggaatttactcttnnnnnnnctttaa 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||    
T  7804415 attacattctcattggcaagcattttgatgtaattgcatatcaattgatatttctaatcatgttttacttttaaggaatttactcttaaaaaaacttaaa 7804316  T
Q  302 aggaatttaatacaccactt 321  Q
    ||||||||||| ||||||||    
T  7804315 aggaatttaatgcaccactt 7804296  T

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