View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_18 (Length: 318)
Name: NF10353_low_18
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 16202594 - 16202294
Alignment:
| Q |
1 |
agacaaaatctataatgcagcttctgcagtcaccgataaagctgctggtgctaaaaatgccgttgcttcaaagcttggatacggtgaaacaaatgaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16202594 |
agacaaaatctataatgcagcttctgcagtcaccgacaaagctgctggtgctaaaaatgccgttgcttcaaagcttggatacggtgaaacaaatgaaaca |
16202495 |
T |
|
| Q |
101 |
acacctagtgaaaggcaatcaaaccagaccagttacccctctgtgacagctgctgtcattgacaaagctgccttggctaaaaacgccgtggcatcgaagc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16202494 |
acacctggtgaaaggcaatcaaaccagaccagttacccctctgtgacagctgctgtcattgacaaagctgccttggctaaaaacgctgtggcatcgaagc |
16202395 |
T |
|
| Q |
201 |
ttggatacggtcaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacacatctacaatagctgacaaagccgccacagctaaaaa |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16202394 |
ttggatacggtgaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacacatctacaatagctgacaaagccgccacagctaaaaa |
16202295 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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| T |
16202294 |
t |
16202294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16202861 - 16202594
Alignment:
| Q |
1 |
agacaaaatctataatgcagcttctgcagtcaccgataaagctgctggtgctaaaaatgccgttgcttcaaagcttggatacgg---tgaaacaaatgaa |
97 |
Q |
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|||||||||||| |||||| ||||||||||| | ||||| |||| ||||| ||| || |||||||||||| ||||||| || ||||||| || |
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| T |
16202861 |
agacaaaatctactctgcagcgtctgcagtcactaacaaagccgctgatgctacaaacgcggttgcttcaaagattggatatggcagtgaaacaggcgag |
16202762 |
T |
|
| Q |
98 |
acaacacctagtgaaaggcaatcaaaccagaccagttacccctctgtgacagctgctgtcattgacaaagctgccttggctaaaaacgccgtggcatcga |
197 |
Q |
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|||||| || ||||||||| | ||| |||| ||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||| || | |||| |
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| T |
16202761 |
acaacaactggtgaaaggccaacaagccaggtcagttacccatctgtaacagctgcagtcatagacaaagccgccttggctaaaaacgctgtcacgtcga |
16202662 |
T |
|
| Q |
198 |
agcttggatacggtcaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacaca |
265 |
Q |
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|||||||||||||| ||| ||| ||||||||||||||||||||||| | ||||| ||||| |||||| |
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| T |
16202661 |
agcttggatacggtgaaggaggtgaaacaacaactggtgaaactcctactaaccagagcagctacaca |
16202594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 16202281 - 16202177
Alignment:
| Q |
197 |
aagcttggatacggtcaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacacatctacaatagctgacaaagccgccacagcta |
296 |
Q |
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|
|||||||| |||||| |||||||| |||||||| |||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16202281 |
aagcttgggtacggtgaagaaggcaaaacaacagctggcgatactccattgaaccaaagaagttacacatctacaatagctgacaaagccgccacagcta |
16202182 |
T |
|
| Q |
297 |
aaaat |
301 |
Q |
| |
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||||| |
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|
| T |
16202181 |
aaaat |
16202177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 16202185 - 16202144
Alignment:
| Q |
50 |
gctaaaaatgccgttgcttcaaagcttggatacggtgaaaca |
91 |
Q |
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||||||||||| |||||||||||||||||||| || |||||| |
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| T |
16202185 |
gctaaaaatgcggttgcttcaaagcttggatatggcgaaaca |
16202144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16202999 - 16202919
Alignment:
| Q |
1 |
agacaaaatctataatgcagcttctgcagtcaccgataaagctgctggtgctaaaaatgccgttgcttcaaagcttggata |
81 |
Q |
| |
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|||||||||||| |||| |||||||| | |||| | |||||| |||||||||||||| || ||||| ||||||||||| |
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| T |
16202999 |
agacaaaatctactctgcaacttctgcaattgccgacacagctgccggtgctaaaaatgcggtagcttcgaagcttggata |
16202919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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