View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_19 (Length: 313)
Name: NF10353_low_19
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 36885424 - 36885134
Alignment:
| Q |
10 |
gcagagagctaatggtgttgtggctgcactggtaagctctgtaaattaaagcatgtctaacttgataatgcactcatattttactttatgttacaattaa |
109 |
Q |
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| T |
36885424 |
gcagatagctaatggtgttgtggctgcactggtaagctctgtaaattaaagcatgtctaacttgataatgcactcatattttactttatgttacaattaa |
36885325 |
T |
|
| Q |
110 |
tttgaaaaacctaaaatttaggatgtgggataaatataatccctgctaaattgaagattttcaatacctactctgtgttaagaaaattgcttggtcaatt |
209 |
Q |
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| T |
36885324 |
tttgaaaaacctaaaatttaggatgtgggataaatataatccctgctaaattgaagattttcaatacctactctgtgttaagaaaattgcttggtcaatt |
36885225 |
T |
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| Q |
210 |
ttgcgaaaagaatgatggaaatatagtaatatactaggctacttggttttcctggccgattgtatgagttatcttatgcctgttcaatttg |
300 |
Q |
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| T |
36885224 |
ttgcgaaaagaatgatggaaatatagtaatatactaggctacttggttttcatggccgattgtatgagttatcttatgcctgttcaatttg |
36885134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 20088831 - 20088936
Alignment:
| Q |
10 |
gcagagagctaatggtgttgtggctgcactggtaagctctgtaaattaaagcatgtctaacttgataatgcactcatattttactttatgttacaattaa |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||| ||||||| ||||||| |||||||||||||||| |
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| T |
20088831 |
gcagatagctaatggtgttgtggctgcactggtaagctctttaa-ttaaagcatgtccagcttgatagtgcactcttattttaatttatgttacaattaa |
20088929 |
T |
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| Q |
110 |
tttgaaa |
116 |
Q |
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||||||| |
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| T |
20088930 |
tttgaaa |
20088936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 20089036 - 20089138
Alignment:
| Q |
189 |
aagaaaattgcttggtcaattttgcgaaaagaatgatggaaatatagtaatatactaggctacttggttttcctggccgattgtatgagttatcttatgc |
288 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | | ||||||| |||||||||||||| |
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| T |
20089036 |
aagaaaattgcttggtcaattttgcgaaatgaatgatggaaata--------tactaggctacttggttttcttcgacgattgtctgagttatcttatgt |
20089127 |
T |
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| Q |
289 |
ctgttcaattt |
299 |
Q |
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||||||||||| |
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| T |
20089128 |
ctgttcaattt |
20089138 |
T |
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