View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10353_low_2 (Length: 473)

Name: NF10353_low_2
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10353_low_2
NF10353_low_2
[»] chr6 (12 HSPs)
chr6 (63-456)||(33121150-33121543)
chr6 (155-300)||(32134018-32134164)
chr6 (177-312)||(5611112-5611247)
chr6 (1-49)||(33121817-33121865)
chr6 (178-300)||(2470347-2470469)
chr6 (180-240)||(27082309-27082369)
chr6 (182-233)||(8636806-8636857)
chr6 (185-300)||(19659610-19659724)
chr6 (175-233)||(31223188-31223247)
chr6 (185-318)||(227336-227471)
chr6 (179-282)||(17345855-17345958)
chr6 (251-289)||(31223253-31223291)
[»] chr2 (30 HSPs)
chr2 (151-300)||(42251575-42251725)
chr2 (191-299)||(40346717-40346825)
chr2 (185-275)||(41436328-41436418)
chr2 (185-297)||(18717853-18717965)
chr2 (175-282)||(31904236-31904342)
chr2 (214-300)||(23453377-23453463)
chr2 (151-300)||(42551958-42552106)
chr2 (175-327)||(13717171-13717322)
chr2 (185-297)||(40574141-40574253)
chr2 (151-297)||(13738393-13738540)
chr2 (179-281)||(14953021-14953123)
chr2 (174-299)||(17641166-17641291)
chr2 (180-272)||(4978775-4978867)
chr2 (180-272)||(4996683-4996775)
chr2 (185-272)||(28331277-28331364)
chr2 (247-301)||(36087408-36087462)
chr2 (180-261)||(6315885-6315966)
chr2 (195-289)||(7932897-7932991)
chr2 (179-281)||(18857431-18857533)
chr2 (207-261)||(43681305-43681359)
chr2 (185-301)||(4557574-4557691)
chr2 (207-299)||(1004771-1004862)
chr2 (191-275)||(9021482-9021566)
chr2 (185-281)||(29526315-29526411)
chr2 (148-270)||(8580477-8580600)
chr2 (185-280)||(27896466-27896561)
chr2 (247-281)||(7669194-7669228)
chr2 (247-300)||(3689614-3689667)
chr2 (185-282)||(38024194-38024290)
chr2 (180-280)||(43131774-43131874)
[»] chr5 (14 HSPs)
chr5 (185-290)||(27544592-27544697)
chr5 (151-302)||(22293952-22294104)
chr5 (180-302)||(41645032-41645152)
chr5 (207-318)||(30293800-30293911)
chr5 (180-299)||(36482050-36482168)
chr5 (152-300)||(11815880-11816029)
chr5 (180-297)||(30840596-30840712)
chr5 (179-229)||(41175393-41175443)
chr5 (185-322)||(6646291-6646428)
chr5 (175-275)||(8151815-8151918)
chr5 (195-281)||(7718502-7718589)
chr5 (251-302)||(34346951-34347002)
chr5 (195-236)||(26402066-26402107)
chr5 (207-275)||(27365991-27366059)
[»] chr8 (27 HSPs)
chr8 (185-300)||(1342325-1342439)
chr8 (180-302)||(10029160-10029282)
chr8 (153-281)||(29030422-29030554)
chr8 (178-288)||(32881109-32881219)
chr8 (151-299)||(41726864-41727013)
chr8 (182-301)||(44648932-44649051)
chr8 (175-301)||(11150916-11151041)
chr8 (175-299)||(35901412-35901536)
chr8 (185-299)||(18200677-18200791)
chr8 (150-282)||(18647474-18647606)
chr8 (151-304)||(31330968-31331123)
chr8 (195-301)||(6270144-6270249)
chr8 (179-301)||(13873694-13873816)
chr8 (191-280)||(42361529-42361618)
chr8 (185-301)||(600375-600491)
chr8 (180-281)||(23425277-23425382)
chr8 (190-300)||(27506943-27507051)
chr8 (151-289)||(43917555-43917694)
chr8 (195-300)||(3347506-3347610)
chr8 (175-297)||(20542380-20542502)
chr8 (190-261)||(17720212-17720283)
chr8 (215-297)||(2768559-2768641)
chr8 (175-233)||(23725687-23725745)
chr8 (185-318)||(40489853-40489985)
chr8 (190-281)||(3137408-3137499)
chr8 (180-282)||(547060-547166)
chr8 (254-290)||(33621438-33621474)
[»] chr4 (22 HSPs)
chr4 (175-301)||(27284065-27284191)
chr4 (186-327)||(22019607-22019748)
chr4 (179-299)||(12076424-12076544)
chr4 (180-299)||(20775070-20775189)
chr4 (153-301)||(13967814-13967964)
chr4 (180-300)||(16341097-16341217)
chr4 (185-301)||(12094961-12095077)
chr4 (178-300)||(27133545-27133667)
chr4 (185-301)||(31991452-31991568)
chr4 (175-297)||(2824814-2824936)
chr4 (154-261)||(19480508-19480616)
chr4 (207-299)||(28176801-28176892)
chr4 (177-282)||(7437842-7437947)
chr4 (215-288)||(22611904-22611977)
chr4 (210-279)||(31861444-31861513)
chr4 (184-281)||(21755875-21755974)
chr4 (201-301)||(31089779-31089878)
chr4 (195-290)||(55126783-55126879)
chr4 (247-301)||(31089510-31089564)
chr4 (175-261)||(39810737-39810822)
chr4 (175-229)||(52837333-52837387)
chr4 (221-281)||(37183077-37183137)
[»] chr1 (22 HSPs)
chr1 (180-298)||(30941466-30941584)
chr1 (151-300)||(33148126-33148275)
chr1 (185-301)||(26829495-26829611)
chr1 (185-325)||(8001717-8001857)
chr1 (215-290)||(48579929-48580004)
chr1 (175-301)||(46295865-46295991)
chr1 (195-328)||(11449073-11449206)
chr1 (180-288)||(30109224-30109333)
chr1 (202-290)||(10226467-10226555)
chr1 (185-300)||(5069500-5069614)
chr1 (175-282)||(17169283-17169390)
chr1 (195-322)||(27688492-27688619)
chr1 (178-300)||(13969094-13969216)
chr1 (191-299)||(50015771-50015879)
chr1 (182-233)||(34347572-34347623)
chr1 (180-229)||(3529109-3529158)
chr1 (180-281)||(5069701-5069802)
chr1 (196-249)||(40430824-40430877)
chr1 (194-318)||(34382610-34382733)
chr1 (250-300)||(39993446-39993496)
chr1 (231-279)||(763185-763233)
chr1 (152-233)||(38597446-38597531)
[»] chr3 (22 HSPs)
chr3 (185-301)||(38359050-38359166)
chr3 (185-318)||(50958863-50958996)
chr3 (152-281)||(48338782-48338912)
chr3 (176-289)||(53818820-53818932)
chr3 (185-289)||(55446736-55446839)
chr3 (154-299)||(44698189-44698335)
chr3 (178-275)||(29032408-29032505)
chr3 (185-270)||(31494030-31494115)
chr3 (175-318)||(6785771-6785915)
chr3 (167-290)||(11676741-11676865)
chr3 (168-301)||(28709560-28709693)
chr3 (185-281)||(47334863-47334959)
chr3 (193-300)||(4020109-4020216)
chr3 (175-300)||(635700-635825)
chr3 (185-282)||(49261783-49261880)
chr3 (216-288)||(8326171-8326243)
chr3 (180-280)||(34145920-34146019)
chr3 (152-300)||(1711919-1712068)
chr3 (185-261)||(4128727-4128803)
chr3 (152-282)||(49543174-49543305)
chr3 (180-281)||(25319461-25319562)
chr3 (243-275)||(31904734-31904766)
[»] chr7 (24 HSPs)
chr7 (180-299)||(1309720-1309839)
chr7 (195-325)||(8896568-8896698)
chr7 (185-288)||(43626350-43626453)
chr7 (152-288)||(23142660-23142797)
chr7 (157-302)||(37928274-37928420)
chr7 (153-275)||(16979912-16980035)
chr7 (179-280)||(31487725-31487826)
chr7 (182-275)||(34993148-34993241)
chr7 (207-281)||(31850762-31850836)
chr7 (195-280)||(8746149-8746234)
chr7 (179-297)||(16685728-16685848)
chr7 (179-297)||(17659964-17660084)
chr7 (150-259)||(30027931-30028041)
chr7 (185-322)||(43118809-43118946)
chr7 (246-301)||(34993092-34993147)
chr7 (247-289)||(1554025-1554067)
chr7 (153-297)||(19676965-19677110)
chr7 (190-299)||(25530541-25530650)
chr7 (185-235)||(1521261-1521311)
chr7 (151-281)||(12810161-12810291)
chr7 (185-299)||(42888306-42888420)
chr7 (180-229)||(22931924-22931973)
chr7 (185-278)||(27235256-27235349)
chr7 (197-261)||(23080659-23080723)
[»] scaffold0079 (1 HSPs)
scaffold0079 (180-300)||(51644-51764)
[»] scaffold0036 (1 HSPs)
scaffold0036 (215-318)||(36565-36668)
[»] scaffold0002 (1 HSPs)
scaffold0002 (152-302)||(120638-120789)
[»] scaffold0204 (1 HSPs)
scaffold0204 (176-281)||(15380-15485)


Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 63 - 456
Target Start/End: Complemental strand, 33121543 - 33121150
Alignment:
Q  63 taccaaaatattactggccaacaatctcgatatcaaggtttctatttagagaaatgattagttttcttaattagatagtagaaaatagtaggagaatgct 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121543 taccaaaatattactggccaacaatctcgatatcaaggtttctatttagagaaatgattagttttcttaattagatagtagaaaatagtaggagaatgct 33121444  T
Q  163 aactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttc 262  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  33121443 aactagtgttctagggtattgattaaacataaaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgataaaaaataacatcttatatttt 33121344  T
Q  263 taagacaaaatttttatttgaagattccctaaccattgctttaaaggcactggttaacaaaactcaaaatatagtataagtagtttcgaaaacactgcat 362  Q
     ||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  33121343 caagacaaaaattttatttgaaaatttcttaaccattactttaaaggcactggttaacaaaacccaaaatatagtataagtagtttcgaaaacaccgcat 33121244  T
Q  363 catagcttcaagacgttgagattacatccaatttgattttaattgaaatcaattagtttattaatgataactaatccaatctaagatcccattt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33121243 catagcttcaagacgttgagattacatccaatttgattttaattgaaatcaattagtttattaatgataactaatccaatctaagatccaattt 33121150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 32134018 - 32134164
Alignment:
Q  155 agaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatc 253  Q
    ||||||||||||||||  ||| ||| |||| |||| |||| ||||||||||| ||||| |||||||||||||||||||||  |||||| |||||||||||    
T  32134018 agaatgctaactagtgccctaagggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatc 32134117  T
Q  254 ttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    |||||||   || ||||||||| |||||| ||||||| |||| ||||    
T  32134118 ttatattctcaaaacaaaatttctatttgtagattccttaactattg 32134164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 312
Target Start/End: Complemental strand, 5611247 - 5611112
Alignment:
Q  177 ggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttt 276  Q
    ||||||| |||||||||||||| |||||| |||| ||||| ||||||| |||| ||| ||||||  ||| |||||||||||||||||||||||||||||     
T  5611247 ggtattggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttc 5611148  T
Q  277 tatttgaagattccctaaccattgctttaaaggcac 312  Q
    |||||  ||||||| |||| ||| | ||||| ||||    
T  5611147 tatttatagattccttaacaatttcgttaaaagcac 5611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33121865 - 33121817
Alignment:
Q  1 taatgatgatatgcatttatatcacttttaacaataccaaaatatttgt 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121865 taatgatgatatgcatttatatcacttttaacaataccaaaatatttgt 33121817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 2470347 - 2470469
Alignment:
Q  178 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 277  Q
    |||||| |||| |||| |||||| |||| |||| ||||||||||||| ||||||||  ||||   ||||||| |||||||||||| |||||||| ||| |    
T  2470347 gtattggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttct 2470446  T
Q  278 atttgaagattccctaaccattg 300  Q
    |||||  |||||| |||||||||    
T  2470447 atttggtgattccttaaccattg 2470469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 27082309 - 27082369
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgat 240  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  27082309 attggttaaacaaccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgat 27082369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 8636857 - 8636806
Alignment:
Q  182 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 233  Q
    ||||||| ||| |||||||||||| |||||||||||||||| ||||||||||    
T  8636857 tgattaagcatacaaaataagtaagttttcatgaaaaagttatgtaatcatt 8636806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 19659724 - 19659610
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| ||||||||||| |||| || |||||||||||||||||||  |||||  || |||| |||| |||||| | | ||||||||| | |||| |    
T  19659724 ttaaacatctaaaataagtaagtttttataaaaaagttgtgtaatcattagttgatcaaatataatatctcatattt-tcaaacaaaatttatttttgta 19659626  T
Q  285 gattccctaaccattg 300  Q
    |||||| | |||||||    
T  19659625 gattccttgaccattg 19659610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 31223188 - 31223247
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatg-aaaaagttgtgtaatcatt 233  Q
    |||| |||| |||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  31223188 agggcattggttaaacatccaaaacaagtaagttttcatgaaaaaagttgtgtaatcatt 31223247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 227336 - 227471
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaag-ttgtgtaatcattgtttg-atagaaaataacatcttatatttctaagacaaaatttttatttg 282  Q
    |||| ||||||||| ||||||  ||| ||||||||  |||||||||||||||||  ||  ||| |||||||||||||||  || | ||||||| |||||     
T  227336 ttaagcatccaaaagaagtaagattttatgaaaaaaattgtgtaatcattgtttttatcaaaagtaacatcttatattttcaaaaaaaaatttctattta 227435  T
Q  283 aagattccctaaccattgctttaaaggcactggtta 318  Q
     ||||||| ||||||||||  ||| | |||||||||    
T  227436 tagattccttaaccattgccctaaggacactggtta 227471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 17345958 - 17345855
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    ||||| |||| ||| ||||| || ||||||||  |||||||||| |||||||  |  |||||  ||| |||||| |||||||| ||| ||||||||||||    
T  17345958 tattggttaagcattcaaaacaaataaattttagtgaaaaagttatgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaattttta 17345859  T
Q  279 tttg 282  Q
    ||||    
T  17345858 tttg 17345855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 31223253 - 31223291
Alignment:
Q  251 atcttatatttctaagacaaaatttttatttgaagattc 289  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  31223253 atcttatatttccaagacaaaatttttatttgtagattc 31223291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 151 - 300
Target Start/End: Original strand, 42251575 - 42251725
Alignment:
Q  151 taggagaatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 249  Q
    ||||| ||||||||||||||| || |||| |||| |||| ||||||||| |||||| ||| ||||||||||||||||||||||||  ||||| |||||||    
T  42251575 taggaaaatgctaactagtgtctcaagggcattggttaagcatccaaaacaagtaagtttacatgaaaaagttgtgtaatcattgaatgataaaaaataa 42251674  T
Q  250 catcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    ||| |||||||||||||| ||| |||||| ||  ||||||| |||||||||    
T  42251675 catgttatatttctaagataaattttttacttagagattccttaaccattg 42251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 40346717 - 40346825
Alignment:
Q  191 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 290  Q
    ||||||||||||||| |||| |||||||||||||| ||||||| ||||||  |||||||||||||||||||  || ||||||||| ||| || |||||||    
T  40346717 atccaaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgtagattcc 40346816  T
Q  291 ctaaccatt 299  Q
     ||||||||    
T  40346817 ttaaccatt 40346825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 41436328 - 41436418
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||| |||||||    
T  41436328 ttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaaataacatcttatacttctaagataaaattt 41436418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 18717853 - 18717965
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| ||||||||| ||  ||||||||||||||||||||||||||||||  |||||  ||| ||||||||||||||| ||| | ||||||| |||||| |    
T  18717853 ttaagcatccaaaacaaacaaattttcatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgta 18717952  T
Q  285 gattccctaacca 297  Q
     ||||| ||||||    
T  18717953 aattccttaacca 18717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 31904342 - 31904236
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||| |||| |||| |||| |||||||||||||||| |||||||| |||||||||||||  |||||  |||||||||| |||||||| ||||| |||||     
T  31904342 agggcattggttaatcatctaaaataagtaaatttt-atgaaaaaattgtgtaatcattacttgattaaaaataacattttatatttttaagataaaata 31904244  T
Q  275 tttatttg 282  Q
    ||||||||    
T  31904243 tttatttg 31904236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 23453377 - 23453463
Alignment:
Q  214 gaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    ||||||||||||||||| || ||||||  ||| |||||||||||||||  ||||||||||||||||||| ||||||| |||| ||||    
T  23453377 gaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgtagattccttaactattg 23453463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 300
Target Start/End: Complemental strand, 42552106 - 42551958
Alignment:
Q  151 taggagaatgctaactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    ||||||||||||||| ||||  | | |  |||| |||||||| ||||| |||||| |||| ||||||||| |||| |||| || ||||||| |||||||     
T  42552106 taggagaatgctaaccagtgcccaatgacattggttaaacatacaaaacaagtaagtttttatgaaaaagatgtgcaatcgttatttgataaaaaataat 42552007  T
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    || |||||| |  ||||||||| ||||||||| ||||||| |||||||||    
T  42552006 at-ttatatcttcaagacaaaaattttatttgtagattccttaaccattg 42551958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 327
Target Start/End: Original strand, 13717171 - 13717322
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||||| || |||| |||| ||||||||||| ||||||| |||||||| |||||| |||  ||  || |||||||||| ||||||||  |||||||||||    
T  13717171 agggtaatggttaagcatctaaaataagtaagttttcatcaaaaagttatgtaattattacttatta-aaaataacattttatattttcaagacaaaatt 13717269  T
Q  275 tttatttgaagattccctaaccattgctttaaaggcactggttaacaaaactc 327  Q
    | |||||| | ||||| |||| |||||| | | ||||| ||||||||| ||||    
T  13717270 tctatttgtatattccttaactattgctctgagggcaccggttaacaagactc 13717322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 40574253 - 40574141
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||| |||  |  ||  ||| | |||| ||||||||| |||||||||||| |||||| |    
T  40574253 ttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttctatttgta 40574154  T
Q  285 gattccctaacca 297  Q
    |||||| ||||||    
T  40574153 gattccttaacca 40574141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 297
Target Start/End: Complemental strand, 13738540 - 13738393
Alignment:
Q  151 taggagaatgctaactagtgttctaggg-tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 249  Q
    ||||||||||  ||||||||| ||| || ||||| |||| ||||||||| |||||| |||| || ||||| |||||||||||||  || ||   || |||    
T  13738540 taggagaatggcaactagtgtcctaaggatattggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaa 13738441  T
Q  250 catcttatatttctaagacaaaatttttatttgaagattccctaacca 297  Q
    ||||||||||||  || |||||||||||||||  ||||||| ||||||    
T  13738440 catcttatattttcaaaacaaaatttttatttatagattccttaacca 13738393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 14953021 - 14953123
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    ||||| |||| ||||||||||||||||||||  |  ||||| |||| ||||||||  | |||  |||||||||| |||||||| ||||||||||||||||    
T  14953021 tattggttaagcatccaaaataagtaaatttgtaaaaaaaaattgtctaatcattactcgatcaaaaataacattttatatttttaagacaaaattttta 14953120  T
Q  279 ttt 281  Q
    |||    
T  14953121 ttt 14953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 17641166 - 17641291
Alignment:
Q  174 tagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaat 273  Q
    ||||||| ||||||| |||| ||||||||||| |||||||  |||||||||| ||| |||  || ||  ||| |||||| ||||||||| || ||||| |    
T  17641166 tagggtactgattaagcatctaaaataagtaagttttcattgaaaagttgtgcaataatttctttatcaaaagtaacattttatatttcaaaaacaaagt 17641265  T
Q  274 ttttatttgaagattccctaaccatt 299  Q
    ||||||||  ||||||| ||||||||    
T  17641266 ttttatttatagattccttaaccatt 17641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 4978867 - 4978775
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaa 272  Q
    |||| ||||||||||||||||| ||| |||| || |||| ||||||||||||||  |||||  ||| |||||||||||||||  |||||||||    
T  4978867 attggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4978775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 4996775 - 4996683
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaa 272  Q
    |||| ||||||||||||||||| ||| |||| || |||| ||||||||||||||  |||||  ||| |||||||||||||||  |||||||||    
T  4996775 attggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 28331364 - 28331277
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaa 272  Q
    |||| ||| |||||||||||| |||| |||||| |||||||||||||||  |||||  ||||||| || ||||||||| |||||||||    
T  28331364 ttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaa 28331277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 36087408 - 36087462
Alignment:
Q  247 taacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 301  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||    
T  36087408 taacatcttatatttctaagataaaatttctatttgtagattccttaaccattgc 36087462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 6315885 - 6315966
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 261  Q
    |||| |||||||||||||| || ||||||||  | ||||| |||||||||||||  |||||  |||||||||||||||||||    
T  6315885 attggttaaacatccaaaacaaataaatttttgtaaaaaaattgtgtaatcattacttgatcaaaaataacatcttatattt 6315966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 7932991 - 7932897
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattc 289  Q
    ||||||||||| |||| | |||||||||||| |||||||  || ||  ||| ||| |||||| |||||||| ||||||||| |||||| ||||||    
T  7932991 aaaataagtaagtttttacgaaaaagttgtgcaatcattactttatccaaagtaaaatcttacatttctaaaacaaaatttctatttgtagattc 7932897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 18857431 - 18857533
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    |||||||||| ||| ||||| |||||||||||||||||||  | ||||||| |||  || ||  || ||||||| | |||||| ||||||||| ||||||    
T  18857431 tattgattaagcattcaaaacaagtaaattttcatgaaaatatcgtgtaattattactttatcaaagataacatatcatatttttaagacaaacttttta 18857530  T
Q  279 ttt 281  Q
    |||    
T  18857531 ttt 18857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 43681359 - 43681305
Alignment:
Q  207 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 261  Q
    |||| ||||||||||||| |||||||| |||| || |||||||||||||||||||    
T  43681359 tttttatgaaaaagttgtataatcattatttggtaaaaaataacatcttatattt 43681305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 4557574 - 4557691
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaa-gttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttga 283  Q
    |||| ||||||| |||||||| |||| |||||||| |||| ||||| |||  |  ||  |||||||| ||||||||||| |||| ||||||| ||||||     
T  4557574 ttaagcatccaagataagtaagtttttatgaaaaaagttgagtaataattactcaatcaaaaataacttcttatatttccaagataaaatttctatttgt 4557673  T
Q  284 agattccctaaccattgc 301  Q
    ||||||  ||||||||||    
T  4557674 agattctttaaccattgc 4557691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 1004862 - 1004771
Alignment:
Q  207 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccatt 299  Q
    |||| |||||||||||||||||||||  ||| ||  ||| ||| || ||||||||  |||||||||||| |||||| ||||||| ||||||||    
T  1004862 tttttatgaaaaagttgtgtaatcataattt-atcaaaagtaatattttatattttcaagacaaaatttctatttgtagattccttaaccatt 1004771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 9021482 - 9021566
Alignment:
Q  191 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    |||||||||||| || ||||||  ||||| | ||||||||||| |||  |  |||||||||||||| ||||| ||||||||||||    
T  9021482 atccaaaataagaaagttttcacaaaaaaatagtgtaatcattatttagtcaaaaataacatcttacatttccaagacaaaattt 9021566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 29526411 - 29526315
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||||  ||||||||||  ||||||| ||||| |||||||||||||  || ||  ||||||| || |||||||| |||||  ||||||||||||    
T  29526411 ttaaacatttaaaataagtaggttttcataaaaaaattgtgtaatcattactttattaaaaataatattttatatttttaagattaaatttttattt 29526315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 270
Target Start/End: Original strand, 8580477 - 8580600
Alignment:
Q  148 tagtaggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaa 246  Q
    |||| ||||||||||||| ||||  ||| ||| |||| |||| |||||||| ||||| | |||||||||||||  ||| |||| |||  || ||  |||     
T  8580477 tagttggagaatgctaaccagtgccctaagggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaag 8580576  T
Q  247 taacatcttatatttctaagacaa 270  Q
    |||||||||||||||| |||||||    
T  8580577 taacatcttatatttccaagacaa 8580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 27896466 - 27896561
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatt 280  Q
    ||||||| ||||||||||||| |||| || ||||||||||||||| |||  |  ||  ||| ||||| ||||||||||||| ||||| ||| ||||    
T  27896466 ttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 27896561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 7669194 - 7669228
Alignment:
Q  247 taacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||||||||||| |||||||||||||||||||    
T  7669194 taacatcttatatttttaagacaaaatttttattt 7669228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 3689667 - 3689614
Alignment:
Q  247 taacatcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    |||||||||||||||| |||| ||||||| |||||| ||| ||| |||||||||    
T  3689667 taacatcttatatttcaaagataaaatttctatttgtagaatccttaaccattg 3689614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 38024290 - 38024194
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttg 282  Q
    |||||||||||||| |||    |||| ||||||||||| |||||| ||| ||||||  ||| ||| ||||||||||| ||||| ||||||| ||||||    
T  38024290 ttaaacatccaaaacaagcccgttttaatgaaaaagttatgtaattattatttgatc-aaagtaatatcttatatttttaagataaaatttctatttg 38024194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 43131874 - 43131774
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||||||||||| |||||| |||||| |||| || |||| || ||||||| |||  |||||  ||| ||  | |||| |||| |||||||||||||||||    
T  43131874 attgattaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttat 43131775  T
Q  280 t 280  Q
    |    
T  43131774 t 43131774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 27544592 - 27544697
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||  |||| ||||||| |||||| |    
T  27544592 ttaaacatccaaaacaagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttctatttgta 27544691  T
Q  285 gattcc 290  Q
    ||||||    
T  27544692 gattcc 27544697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 151 - 302
Target Start/End: Original strand, 22293952 - 22294104
Alignment:
Q  151 taggagaatgctaactagtgtt-ctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 249  Q
    ||||||||||||||| ||||   | ||||||||| |||||||| ||||| |||||| |||| |||||||||||||| ||| ||| ||||||  |||  ||    
T  22293952 taggagaatgctaaccagtgccacaagggtattggttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaaaccaa 22294051  T
Q  250 catcttatatttctaagacaaaatttttatttgaagattccctaaccattgct 302  Q
     |||||||||||| |||||||||||| |||||| ||||||| |||||||||||    
T  22294052 tatcttatatttccaagacaaaatttctatttgtagattccttaaccattgct 22294104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 41645032 - 41645152
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| |||| |||| |||||||||||||||||||||||  ||||||||||||||  |||||| ||||||| |||||||||||   |||||||||||||||    
T  41645032 attgcttaagcatctaaaataagtaaattttcatgaaa--gttgtgtaatcattacttgataaaaaataatatcttatattttctagacaaaatttttat 41645129  T
Q  280 ttgaagattccctaaccattgct 302  Q
    ||  ||||||  |||||| ||||    
T  41645130 ttatagattctttaaccaatgct 41645152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 30293911 - 30293800
Alignment:
Q  207 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgctttaa 306  Q
    ||||||||||||| || ||||||||||  |||||  ||| ||||||||||||||| ||||||||||||| |||||| ||||||  |||||| | || |||    
T  30293911 ttttcatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaaccaatactctaa 30293812  T
Q  307 aggcactggtta 318  Q
     |||||||||||    
T  30293811 gggcactggtta 30293800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 36482050 - 36482168
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| ||||||||| ||||||| ||| ||||||| |||||||||||||| |||| ||||||  ||| |||||||||||||||  || ||||||||| |||    
T  36482050 attggttaaacatctaaaataa-taagttttcataaaaaagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctat 36482148  T
Q  280 ttgaagattccctaaccatt 299  Q
    ||| ||||||  ||||||||    
T  36482149 ttgtagattcattaaccatt 36482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 11815880 - 11816029
Alignment:
Q  152 aggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    ||||||||||||||||||||  || ||| | |||||||| ||  |||| |||||| |||| ||||||||  ||||||||||||  || ||  ||| ||||    
T  11815880 aggagaatgctaactagtgtcttaagggcaatgattaaatatttaaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaac 11815979  T
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    |||||||||||  |||||||||||| |||||  ||||||  |||||||||    
T  11815980 atcttatattttcaagacaaaatttctatttttagattcattaaccattg 11816029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 30840712 - 30840596
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    ||||||||| ||||||||| |||||| ||||||  |||||||||||||||||||  |||||  ||| |||||||||||||||  |||||||| ||| | |    
T  30840712 attgattaagcatccaaaacaagtaagttttcaa-aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttctgt 30840614  T
Q  280 ttgaagattccctaacca 297  Q
    | | ||||||| ||||||    
T  30840613 tagtagattccttaacca 30840596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 41175443 - 41175393
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 229  Q
    ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||    
T  41175443 tattggttaaacatccaaattaagtaagttttcatgaaaaaattgtgtaat 41175393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 6646291 - 6646428
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| |||| |||||||| || |||||||| |||||||||||||   | ||  ||| |||||| ||||||||| || | |||| ||||||||| |    
T  6646291 ttaaacatctaaaacaagtaaatattaatgaaaaaattgtgtaatcattacattatcaaaagtaacatattatatttcaaatataaaaattttatttgta 6646390  T
Q  285 gattccctaaccattgctttaaaggcactggttaacaa 322  Q
     |||   ||| ||||||| ||| ||||| |||||||||    
T  6646391 tattatttaatcattgctctaagggcaccggttaacaa 6646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 8151918 - 8151815
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaa-ttttcatgaaaaagttgtgtaatcattgt--ttgatagaaaataacatcttatatttctaagacaaa 271  Q
    ||||||||||||||| || ||||||||||||| ||||||| |||||||| | |||| ||| |  |||||  ||| |||||||||||||||  || |||||    
T  8151918 agggtattgattaaatatacaaaataagtaaatttttcataaaaaagttatataattattatacttgattaaaagtaacatcttatattttcaaaacaaa 8151819  T
Q  272 attt 275  Q
    ||||    
T  8151818 attt 8151815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 7718502 - 7718589
Alignment:
Q  195 aaaataagtaaattttcatgaaaaag-ttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||| ||| |||| ||||||||  ||||||||| ||| ||| ||  ||||||||||||||||||| ||||| ||||||| |||||    
T  7718502 aaaataaataagtttttatgaaaaaaattgtgtaatgattatttcattaaaaataacatcttatatttttaagataaaatttatattt 7718589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 34346951 - 34347002
Alignment:
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattgct 302  Q
    |||||||||||  |||||||| |||||||||| ||||||| |||||||||||    
T  34346951 atcttatattttcaagacaaattttttatttgtagattccttaaccattgct 34347002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 26402107 - 26402066
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtt 236  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  26402107 aaaataagtaatttttcaataaaaagttgtgtaatcattgtt 26402066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 27366059 - 27365991
Alignment:
Q  207 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    ||||||||||||| ||| ||||||||| |||| |  ||| ||| |||||||||||| |||| |||||||    
T  27366059 ttttcatgaaaaaattgcgtaatcattatttggtctaaagtaatatcttatatttccaagataaaattt 27365991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 1342325 - 1342439
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||||||| ||  ||| |||||||||||||||| |||| ||||||| ||||||||    
T  1342325 ttaagcatctaaaataagtaagttttcataaaaaagttgtgtaatcattgttt-atcaaaagtaacatcttatatttccaagataaaatttctatttgaa 1342423  T
Q  285 gattccctaaccattg 300  Q
    ||||| ||||||||||    
T  1342424 gattctctaaccattg 1342439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 10029160 - 10029282
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| |||| ||||||||  ||||||||||| ||||||||||||| ||||||||  |||||  ||| |||||||||||||||| |||| |||||||||||    
T  10029160 attggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagataaaatttttat 10029259  T
Q  280 ttgaagattccctaaccattgct 302  Q
    ||| ||||| | |||||||||||    
T  10029260 ttgtagatttcttaaccattgct 10029282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 153 - 281
Target Start/End: Original strand, 29030422 - 29030554
Alignment:
Q  153 ggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaa---aata 248  Q
    ||||||||||||||| |||| || |||||||||||||||||  |||||||||||||||| || ||||| ||||| ||||||| ||||||| ||   ||||    
T  29030422 ggagaatgctaactaatgttataagggtattgattaaacatttaaaataagtaaatttttataaaaaaattgtgcaatcattatttgataaaaaataata 29030521  T
Q  249 acatcttatatttctaagacaaaatttttattt 281  Q
    |||| ||||||||| |||||||||||| |||||    
T  29030522 acatgttatatttcaaagacaaaatttatattt 29030554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 32881109 - 32881219
Alignment:
Q  178 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 277  Q
    |||||| ||||||||||||||||||||| |||| |  |||| |||||||||||||   |||||| ||||||| ||||||||||| |||||||||||||||    
T  32881109 gtattggttaaacatccaaaataagtaagtttttaataaaatgttgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaattttt 32881208  T
Q  278 atttgaagatt 288  Q
    ||||| |||||    
T  32881209 atttgtagatt 32881219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 299
Target Start/End: Original strand, 41726864 - 41727013
Alignment:
Q  151 taggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 249  Q
    |||||||||| |||||||||  ||| ||| | || |||| |||| ||||||||||| |||| ||||||||  | ||||||||||  || ||| |||||||    
T  41726864 taggagaatgataactagtgccctaagggcaatggttaagcatctaaaataagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataa 41726963  T
Q  250 catcttatatttctaagacaaaatttttatttgaagattccctaaccatt 299  Q
    ||| ||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  41726964 cattttatatttccaagacaaaatttttatttgtagattccttaaccatt 41727013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 44649051 - 44648932
Alignment:
Q  182 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||| ||||||||| || ||| |||||||||||||||||||||||||||  || ||  ||| |||||| ||||||||  |||||||||||| |||||    
T  44649051 tgattaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctattt 44648952  T
Q  282 gaagattccctaaccattgc 301  Q
    | ||||||| ||||||||||    
T  44648951 gtagattccttaaccattgc 44648932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 11150916 - 11151041
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||| |||| |||| ||| |||||||||||| |||| |  ||||| ||||||||||||| ||||||  ||| |||||||||||||||||||||||||| |    
T  11150916 agggcattggttaagcattcaaaataagtaagtttttaaaaaaaa-ttgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaat 11151014  T
Q  275 tttatttgaagattccctaaccattgc 301  Q
    |||||||| ||||||| ||| ||||||    
T  11151015 tttatttgtagattccttaatcattgc 11151041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 299
Target Start/End: Complemental strand, 35901536 - 35901412
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    ||||||||| |||| ||||||||| |||||| |||| |||||||||||||| ||||||| ||| ||  ||| |||||||||| ||||  || ||||||||    
T  35901536 agggtattggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatt 35901437  T
Q  275 tttatttgaagattccctaaccatt 299  Q
    | |||||| ||||||| ||||||||    
T  35901436 tctatttgtagattccttaaccatt 35901412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 299
Target Start/End: Complemental strand, 18200791 - 18200677
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| ||||||||||||||||  ||| |||||||| |||||||||||||  || ||  ||| |||||| |||||||| |||||||||||||||||||| |    
T  18200791 ttaagcatccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgta 18200692  T
Q  285 gattccctaaccatt 299  Q
    |||| | ||||||||    
T  18200691 gatttcttaaccatt 18200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 282
Target Start/End: Complemental strand, 18647606 - 18647474
Alignment:
Q  150 gtaggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaata 248  Q
    ||||||||||||||||||||||  || ||||| || |||| |||  |||| |||||||||| ||||||||| ||||||||||||  ||| ||  ||||||    
T  18647606 gtaggagaatgctaactagtgtcgtaagggtaatggttaagcatttaaaacaagtaaatttccatgaaaaaattgtgtaatcatcattttatc-aaaata 18647508  T
Q  249 acatcttatatttctaagacaaaatttttatttg 282  Q
    ||||||||||||| ||||| ||||||| ||||||    
T  18647507 acatcttatatttttaagataaaatttctatttg 18647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 31330968 - 31331123
Alignment:
Q  151 taggagaatgctaactagtgttctagggt-attgattaaacatccaaaataagtaaattttcatgaa-aaagttgtgtaatcattgtttgatagaaaata 248  Q
    |||||||||| |||| ||||||||| ||  |||| |||| ||||||||| ||| |||| ||| | || ||||||||||||||| ||||||||  ||| ||    
T  31330968 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 31331067  T
Q  249 acatcttatatttctaagacaaaatttttatttgaagattccctaaccattgcttt 304  Q
    |||||||||||||| |||| ||||||| |||||| ||| ||| ||| || ||||||    
T  31331068 acatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgcttt 31331123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 6270249 - 6270144
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 294  Q
    |||| |||||| ||||||| |||||||||||||||||||  || ||  ||||||||| |||||||||| ||||||||||||||| ||| ||||||| |||    
T  6270249 aaaacaagtaagttttcataaaaaagttgtgtaatcattactttatc-aaaataacaccttatatttccaagacaaaatttttaattgtagattccttaa 6270151  T
Q  295 ccattgc 301  Q
    | |||||    
T  6270150 ctattgc 6270144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 13873694 - 13873816
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    ||||| |||||||| ||||| || ||| |||| |||||||| || || |||||||  || ||  |||||||||||||||||||||||||||||| |||||    
T  13873694 tattggttaaacattcaaaacaattaagtttttatgaaaaaattatgcaatcattacttaattaaaaataacatcttatatttctaagacaaaaatttta 13873793  T
Q  279 tttgaagattccctaaccattgc 301  Q
    |||  ||||||| ||| ||||||    
T  13873794 tttatagattccttaatcattgc 13873816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 42361618 - 42361529
Alignment:
Q  191 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatt 280  Q
    |||||||| |||||| ||||||||||||||||||| |||| ||  || ||| |||| ||||||||||||||| |||||||||||| ||||    
T  42361618 atccaaaacaagtaagttttcatgaaaaagttgtgcaatctttactttataaaaaagaacatcttatatttcaaagacaaaatttctatt 42361529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 600375 - 600491
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| |||| || ||| ||||||||||||||||||| |||||||  || ||  ||| |||||||||||||||| ||| |||||  |||||||| |    
T  600375 ttaaacatctaaaacaaataagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaaaatttatttgta 600474  T
Q  285 gattccctaaccattgc 301  Q
    |||||| ||| ||||||    
T  600475 gattccttaatcattgc 600491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 23425382 - 23425277
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac----atcttatatttctaagacaaaattt 275  Q
    |||||||||  |||||||| |||||  |||| |||||||||||||||||||||| ||||||  ||||||||    ||||||||||| | |||||||||||    
T  23425382 attgattaagtatccaaaacaagtacgttttaatgaaaaagttgtgtaatcattatttgatcaaaaataacatttatcttatatttttgagacaaaattt 23425283  T
Q  276 ttattt 281  Q
    ||||||    
T  23425282 ttattt 23425277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 27507051 - 27506943
Alignment:
Q  190 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattc 289  Q
    |||| |||| |||||||||||||||||||||||||||||| ||| ||| ||  ||| ||| |||||||||||| || ||  |||||||||||| ||||||    
T  27507051 catctaaaacaagtaaattttcatgaaaaagttgtgtaattattattttatcaaaagtaatatcttatatttccaaaac--aatttttatttgtagattc 27506954  T
Q  290 cctaaccattg 300  Q
      |||||||||    
T  27506953 tttaaccattg 27506943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 43917555 - 43917694
Alignment:
Q  151 taggagaatgctaactagtgttctaggg-tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 249  Q
    ||||||||||||||| ||||   || || ||||| |||| ||||||||| ||||||||||| || ||||| ||||||||| ||| ||||||  ||| |||    
T  43917555 taggagaatgctaaccagtgcattaaggatattggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaa 43917654  T
Q  250 catcttatatttctaagacaaaatttttatttgaagattc 289  Q
    |  |||||||||  ||||||||| ||||||||| ||||||    
T  43917655 cgccttatattttcaagacaaaaattttatttgtagattc 43917694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 3347610 - 3347506
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 294  Q
    |||||| ||||||||| ||||||| |||||||||| |||  || ||  ||| |||||||||||||||  ||||||||||||||||||| ||||| | |||    
T  3347610 aaaatatgtaaatttttatgaaaa-gttgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaa 3347512  T
Q  295 ccattg 300  Q
    ||||||    
T  3347511 ccattg 3347506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 20542380 - 20542502
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||| |||| |||| |||||||||  ||||| |||| | ||||||  ||||||||||||  || ||  ||| |||||||||||||||| ||||| |||||    
T  20542380 agggcattggttaagcatccaaaacgagtaagtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaatt 20542479  T
Q  275 tttatttgaagattccctaacca 297  Q
    | |||||| ||||||| ||||||    
T  20542480 tctatttgtagattccttaacca 20542502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 17720283 - 17720212
Alignment:
Q  190 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 261  Q
    ||||||||| ||  || |||||||||||||||||||||||||||   ||||  |||||||||||||||||||    
T  17720283 catccaaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataacatcttatattt 17720212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 2768641 - 2768559
Alignment:
Q  215 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaacca 297  Q
    ||||| ||||| ||||||| ||| ||  ||| |||||| ||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  2768641 aaaaaattgtgcaatcattatttaattaaaactaacattttatatttccaagacaaaatttttatttgtagaatccttaacca 2768559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 23725745 - 23725687
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 233  Q
    |||| |||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||    
T  23725745 agggcattggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtgatcatt 23725687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 40489853 - 40489985
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||| ||| |||| || ||| |||| ||||||||||| ||||||||||  || ||  | | |||||| ||||||||  ||| ||||||||||| ||| |    
T  40489853 ttaaatatctaaaacaaataagtttttatgaaaaagttatgtaatcattactttatcaatagtaacattttatatttacaaggcaaaattttta-ttgta 40489951  T
Q  285 gattccctaaccattgctttaaaggcactggtta 318  Q
    |||||| ||||||||||  |||| ||||||||||    
T  40489952 gattccttaaccattgccctaaaagcactggtta 40489985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 3137408 - 3137499
Alignment:
Q  190 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||||| || ||| |||  |||||||||||||||||| |||  |||||  ||| |||||||||| ||||  |||||||||||| |||||    
T  3137408 catccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctattt 3137499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 547060 - 547166
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac----atcttatatttctaagacaaaattt 275  Q
    |||||||||  ||| |||| |||||  |||| |||||||||||||||||| ||| ||||||  ||||||||    |||||||||||  |||| |||||||    
T  547060 attgattaagtatctaaaacaagtacgttttaatgaaaaagttgtgtaattattatttgatcaaaaataacatttatcttatattttcaagataaaattt 547159  T
Q  276 ttatttg 282  Q
     ||||||    
T  547160 ctatttg 547166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 33621438 - 33621474
Alignment:
Q  254 ttatatttctaagacaaaatttttatttgaagattcc 290  Q
    |||||||| |||||||||||||||||||| |||||||    
T  33621438 ttatatttttaagacaaaatttttatttgtagattcc 33621474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 27284065 - 27284191
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||| |||| ||||||||||||||||| ||| |||| || ||||||||||| ||||||| ||||||  ||| |||||||||||||||| |||||||||||    
T  27284065 agggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatt 27284164  T
Q  275 tttatttgaagattccctaaccattgc 301  Q
    | ||| || ||||||| ||||||||||    
T  27284165 tctatatgtagattccttaaccattgc 27284191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 327
Target Start/End: Original strand, 22019607 - 22019748
Alignment:
Q  186 taaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaag 285  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||||||||  || |||||||||||||||||||||||  ||||||||||||| ||||  ||    
T  22019607 taaacattcaaaacaagtaagttttcaagaaaaagttgtgtaatcattacttaatagaaaataacatcttatattttaaagacaaaattttcatttatag 22019706  T
Q  286 attccctaaccattgctttaaaggcactggttaacaaaactc 327  Q
    ||||| |||||| |    ||||  ||||||||||||||||||    
T  22019707 attccttaaccaatatcctaaaaacactggttaacaaaactc 22019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 12076544 - 12076424
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    ||||| ||||||||| |||| |||||| || |||| ||||| |||||| ||||||| |||||  ||| |||||||||||||||  |||||||||||||||    
T  12076544 tattggttaaacatctaaaacaagtaagttctcatcaaaaaattgtgtgatcattgcttgatcaaaattaacatcttatattttcaagacaaaattttta 12076445  T
Q  279 tttgaagattccctaaccatt 299  Q
    |||||||||||| ||||||||    
T  12076444 tttgaagattccttaaccatt 12076424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 20775070 - 20775189
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| |||| ||||||||| |||||| |||| ||||||||||| |||||| ||| ||||||  ||||||| ||||||||||||||||||||| |||||||    
T  20775070 attggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttat 20775169  T
Q  280 ttgaagattccctaaccatt 299  Q
    ||  ||||||  ||||||||    
T  20775170 ttatagattcattaaccatt 20775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 13967814 - 13967964
Alignment:
Q  153 ggagaatgctaactagtgttct-agggtattgattaaacatccaaaataagtaaattttc-atgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    ||||||||||||| ||||  || | |||| || |||||||||||||| | |||| ||||  ||||||||||||| ||||||||  |||||| ||||||||    
T  13967814 ggagaatgctaaccagtgccctcatggtaatggttaaacatccaaaacatgtaatttttttatgaaaaagttgtataatcattacttgataaaaaataac 13967913  T
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 301  Q
    |||||||||| | |||||||||||| |||||| ||||||| |||| |||||    
T  13967914 atcttatattaccaagacaaaatttctatttgtagattccttaactattgc 13967964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 16341217 - 16341097
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| ||||||||||||||||| |||||||| |||||||| || ||||||||||  || ||  ||| |||||| ||||||||| ||||||||| ||||||    
T  16341217 attggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttat 16341118  T
Q  280 ttgaagattccctaaccattg 300  Q
    ||| | ||||| |||||||||    
T  16341117 ttgtaaattccttaaccattg 16341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 12094961 - 12095077
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||  ||| ||| |||||||||||  ||  |||||||| |||||| |    
T  12094961 ttaaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttctatttgta 12095060  T
Q  285 gattccctaaccattgc 301  Q
    |||||| |||| |||||    
T  12095061 gattccttaactattgc 12095077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 27133545 - 27133667
Alignment:
Q  178 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 277  Q
    |||||| |||| |||| |||||| |||| |||| ||||||||||||| ||||||||  ||||   ||||||| |||||||||||| |||||||| ||| |    
T  27133545 gtattggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttct 27133644  T
Q  278 atttgaagattccctaaccattg 300  Q
    |||||  |||||| |||||||||    
T  27133645 atttggtgattccttaaccattg 27133667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 31991568 - 31991452
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||  ||||||||||||||||||||||||| | ||||||| |||  || ||  |||||||||||||||||||  ||  ||||||||||| |||      
T  31991568 ttaaacatataaaataagtaaattttcatgaaaaaatcgtgtaattattactttatcaaaaataacatcttatattttcaaagcaaaatttttaattgtg 31991469  T
Q  285 gattccctaaccattgc 301  Q
    |||||| ||||||||||    
T  31991468 gattccttaaccattgc 31991452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 2824936 - 2824814
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||| ||||||||| |||| |||| ||| || |||| ||||||| ||||||||||||||  |||||  ||| |||||||||||||| | ||||||||| |    
T  2824936 agggcattgattaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaagt 2824837  T
Q  275 tttatttgaagattccctaacca 297  Q
      |||||| ||| ||| ||||||    
T  2824836 gctatttgtagaatccttaacca 2824814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 19480508 - 19480616
Alignment:
Q  154 gagaatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacat 252  Q
    |||||||||||||| ||  || ||||||||||||||  ||  |||| |||||| |||| ||||||||||||||||||||||  || ||  ||| ||||||    
T  19480508 gagaatgctaactaatgcctcaagggtattgattaagaatttaaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacat 19480607  T
Q  253 cttatattt 261  Q
    |||||||||    
T  19480608 cttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 299
Target Start/End: Original strand, 28176801 - 28176892
Alignment:
Q  207 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccatt 299  Q
    |||| ||||||||| |||||||||||| ||| ||  ||||||| ||||||||||||||||| ||||||| |||||| | ||| | ||||||||    
T  28176801 ttttaatgaaaaagatgtgtaatcattattttatc-aaaataatatcttatatttctaagataaaatttctatttgtaaatttcttaaccatt 28176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 7437947 - 7437842
Alignment:
Q  177 ggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttt 276  Q
    ||||||| |||| ||| ||||||||  || |||| | |||||||||||||||||||   ||| |  ||| |||||||||||||||| |||||| | ||||    
T  7437947 ggtattggttaagcattcaaaataaacaagtttttacgaaaaagttgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagacacattttt 7437848  T
Q  277 tatttg 282  Q
    ||||||    
T  7437847 tatttg 7437842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 22611977 - 22611904
Alignment:
Q  215 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagatt 288  Q
    ||||| ||| |||||||||  || || |||| ||||||||||||||| ||||||||||||| |||||| |||||    
T  22611977 aaaaaattgagtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttatatttgtagatt 22611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 31861513 - 31861444
Alignment:
Q  210 tcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||||||||| |||||||||||||  |||||  ||| |||||||||||||||| || | |||||||||||    
T  31861513 tcatgaaaaatttgtgtaatcattacttgatcaaaagtaacatcttatatttccaaaataaaatttttat 31861444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 21755875 - 21755974
Alignment:
Q  184 attaaacatccaaaataagtaaattttcat--gaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||||| ||||| ||||||||||||||   ||||| | ||||||||||| ||| ||| ||||||| || ||||||||   ||||||||||| |||||    
T  21755875 attaaacatgcaaaacaagtaaattttcattaaaaaaaatggtgtaatcattatttaataaaaaataatattttatattttcgagacaaaatttctattt 21755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 31089878 - 31089779
Alignment:
Q  201 agtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    ||||| |||| ||||||||||||||||||||||  || ||  ||| |||||| |||||||||  ||||||||||| |||| | ||||||| ||| |||||    
T  31089878 agtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttctattggtagattccttaatcattg 31089780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 55126879 - 55126783
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgat-agaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 290  Q
    ||||||| ||| |||| |||||||||||||||||||||| ||| || | ||| |||||| ||||||||  || ||||||  |||||||| |||||||    
T  55126879 aaaataaataagtttttatgaaaaagttgtgtaatcattattttatcaaaaagtaacattttatattttcaaaacaaaaaatttatttgtagattcc 55126783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 31089564 - 31089510
Alignment:
Q  247 taacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 301  Q
    ||||||||||||||| | |||||||||||||||||  ||||||| ||| ||||||    
T  31089564 taacatcttatattttttagacaaaatttttatttatagattccttaatcattgc 31089510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 39810822 - 39810737
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 261  Q
    ||||||||| |||||||||||||| || ||  ||||||||| ||| ||||||||| |||  |||||  ||| |||||||||||||||    
T  39810822 agggtattggttaaacatccaaaacaaatatgttttcatgataaa-ttgtgtaattattacttgatcaaaagtaacatcttatattt 39810737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 52837387 - 52837333
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 229  Q
    |||| |||| |||| ||||||||| ||| ||||||| ||||||||||||||||||    
T  52837387 agggcattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaat 52837333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 37183077 - 37183137
Alignment:
Q  221 ttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    |||||||||||||  |||||  |||||||||| |||||||| ||||| || ||||||||||    
T  37183077 ttgtgtaatcattacttgatcaaaaataacatattatatttataagataagatttttattt 37183137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 30941584 - 30941466
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| |||| |||||| || |||||| ||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||  | |||    
T  30941584 attggttaagcatccagaacaagtaagtttacatgaaaaagttgtgtaattattgtttgataaaaaataacatgttatatttccaagacaaaaaatgtat 30941485  T
Q  280 ttgaagattccctaaccat 298  Q
    ||||||||||| |||||||    
T  30941484 ttgaagattccttaaccat 30941466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 300
Target Start/End: Complemental strand, 33148275 - 33148126
Alignment:
Q  151 taggagaatgctaactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    ||||||||||||||||| || || |||| |||  |||||||| ||||| |||||| |||| |||||||| |||||||||||||  |||||  ||| || |    
T  33148275 taggagaatgctaactaatgctcaagggcatttgttaaacattcaaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagc 33148176  T
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    ||||||||||| |||||||||||||  ||||| | ||||| |||||||||    
T  33148175 atcttatatttttaagacaaaatttcaatttgtatattccttaaccattg 33148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 26829495 - 26829611
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||  || ||  ||| |||||||||||||||| |||||||||||| || ||| |    
T  26829495 ttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaattgta 26829594  T
Q  285 gattccctaaccattgc 301  Q
     ||| | ||||||||||    
T  26829595 aatttcttaaccattgc 26829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 8001857 - 8001717
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||||||||  || ||  ||| |||||||||||||||  |||| ||||||| |||||  |    
T  8001857 ttaagcatctaaaacaagtaaattttcatgtaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctatttcta 8001758  T
Q  285 gattccctaaccattgctttaaaggcactggttaacaaaac 325  Q
    |||||| ||||||||||  | | ||||||||||| ||||||    
T  8001757 gattccttaaccattgccctgagggcactggttagcaaaac 8001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 48579929 - 48580004
Alignment:
Q  215 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 290  Q
    ||||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||| |||| | |||||||    
T  48579929 aaaaagttgtgtaatcattatttgattaaaaattacatcttatatttctaagacaaaatttctattagtagattcc 48580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 46295991 - 46295865
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    ||||||||  |||| ||||||||| || ||| |||| ||||||||||||||| || |||  |||||  ||| |||||| ||||||||  |||| ||||||    
T  46295991 agggtatttgttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatt 46295892  T
Q  275 tttatttgaagattccctaaccattgc 301  Q
    |||||||| ||||||| ||||||||||    
T  46295891 tttatttgtagattccttaaccattgc 46295865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 11449073 - 11449206
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 294  Q
    ||||||||||| |||| ||||||||||| |||||| |||   ||||  ||| |||||| |||||||| ||||||||| |||||||||| ||||||  |||    
T  11449073 aaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatttgtagattctttaa 11449172  T
Q  295 ccattgctttaaaggcactggttaacaaaactca 328  Q
    ||||| |  | ||||||||| ||||||| |||||    
T  11449173 ccatttccgtgaaggcactgattaacaagactca 11449206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 30109224 - 30109333
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttg-tgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    ||||||||||||||||||| |||||| |||| || |||||  |  |||||||||||||||||| |||||||||| ||||||||  || ||||||||| ||    
T  30109224 attgattaaacatccaaaacaagtaagttttaataaaaaaaatcatgtaatcattgtttgataaaaaataacatattatattttcaaaacaaaatttcta 30109323  T
Q  279 tttgaagatt 288  Q
    |||| |||||    
T  30109324 tttggagatt 30109333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 10226555 - 10226467
Alignment:
Q  202 gtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 290  Q
    |||| |||||||||||||||||||||||||||  || ||  ||| |||||||||||||||  |||||||||||| |||||| |||||||    
T  10226555 gtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgtagattcc 10226467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 5069500 - 5069614
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| |||| ||||||| ||| ||||||| |||||||| ||||||||||  || ||  ||||||| |||||||||||  |||||||||||||||| || |    
T  5069500 ttaagcatctaaaataaataagttttcat-aaaaagttatgtaatcattactttatcaaaaataatatcttatatttacaagacaaaatttttatatgta 5069598  T
Q  285 gattccctaaccattg 300  Q
    |||||  |||||||||    
T  5069599 gattctttaaccattg 5069614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 17169390 - 17169283
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||||| || |||| |||| |||| || ||| |||||||||||||||||| |||| |||  || ||  |||||||||||||||||||  ||||||| |||    
T  17169390 agggtaatggttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactttatcaaaaataacatcttatattttcaagacaatatt 17169291  T
Q  275 tttatttg 282  Q
    ||||||||    
T  17169290 tttatttg 17169283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 27688492 - 27688619
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 294  Q
    |||| |||||| ||||||||||||| |||||||||||||  || ||  ||| |||||||||||||||  || | |||||||| ||||| ||||||| |||    
T  27688492 aaaacaagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattttcaatataaaattttaatttgtagattccttaa 27688591  T
Q  295 ccattgctttaaaggcactggttaacaa 322  Q
    | ||| | || | | |||||||||||||    
T  27688592 caatttccttgatgacactggttaacaa 27688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 13969216 - 13969094
Alignment:
Q  178 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 277  Q
    |||||| |||| || |||||| |||||| |||| |||||||| ||||||||| |||  || ||  ||| |||||| ||||||||  |||||||||||| |    
T  13969216 gtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttct 13969117  T
Q  278 atttgaagattccctaaccattg 300  Q
    ||||| ||||||| |||| ||||    
T  13969116 atttgtagattccttaactattg 13969094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 50015879 - 50015771
Alignment:
Q  191 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 290  Q
    |||||||| || |||||||| ||||||||||||| ||||| ||| |||||  ||| ||| ||| ||||||| ||||||||||||  |||||  |||||||    
T  50015879 atccaaaacaaataaatttttatgaaaaagttgtataatcgttgcttgatcaaaagtaatatcatatatttttaagacaaaattcctattttgagattcc 50015780  T
Q  291 ctaaccatt 299  Q
     ||| ||||    
T  50015779 ttaatcatt 50015771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 34347623 - 34347572
Alignment:
Q  182 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 233  Q
    ||||||| ||||||||| |||||||| || ||||||||||||||||||||||    
T  34347623 tgattaagcatccaaaacaagtaaatctttatgaaaaagttgtgtaatcatt 34347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 3529109 - 3529158
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 229  Q
    |||| |||| |||||||||||||||||||||||| ||||| |||||||||    
T  3529109 attggttaagcatccaaaataagtaaattttcataaaaaaattgtgtaat 3529158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 5069701 - 5069802
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| |||||||||||||| |||||| ||||||  | ||| |  ||||||||||||||  |  ||| ||||| |||||||||| |||||||||||| |||    
T  5069701 attggttaaacatccaaaacaagtaagttttcacaataaaatcatgtaatcattgtttagtcaaaagtaacaccttatatttccaagacaaaatttctat 5069800  T
Q  280 tt 281  Q
    ||    
T  5069801 tt 5069802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 40430824 - 40430877
Alignment:
Q  196 aaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 249  Q
    ||||||| || ||||||||||||||||||||||||||| |||| || |||||||    
T  40430824 aaataagcaagttttcatgaaaaagttgtgtaatcattatttgttaaaaaataa 40430877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 318
Target Start/End: Complemental strand, 34382733 - 34382610
Alignment:
Q  194 caaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcccta 293  Q
    ||||| |||||| |||| || ||||||||||||||| ||||||| ||  ||||| | | ||||||||| ||||| ||| |||||||||  || || | ||    
T  34382733 caaaacaagtaactttttat-aaaaagttgtgtaattattgtttaatcaaaaattaaaacttatatttttaagataaattttttatttatagttttctta 34382635  T
Q  294 accattgctttaaaggcactggtta 318  Q
    | |||||| |||| |||||||||||    
T  34382634 atcattgccttaagggcactggtta 34382610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 39993446 - 39993496
Alignment:
Q  250 catcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    ||||||||||||  ||||||||||||||||||| ||||| | |||||||||    
T  39993446 catcttatattttcaagacaaaatttttatttgtagatttcttaaccattg 39993496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 763233 - 763185
Alignment:
Q  231 attgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    ||||||||||  ||||||| | ||||||||||||||||| |||||||||    
T  763233 attgtttgattaaaaataaaaacttatatttctaagacataatttttat 763185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 38597446 - 38597531
Alignment:
Q  152 aggagaatgctaactagtgttcta----gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 233  Q
    |||||||||||||||||||| |||    ||| |||| ||||  |||||||| |||||| |||| || |||||||||| ||||||||    
T  38597446 aggagaatgctaactagtgtactagtaggggcattggttaagtatccaaaacaagtaagttttaataaaaaagttgtctaatcatt 38597531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 38359050 - 38359166
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| ||||||||||| |||||||||||||| || |||||| ||  || ||  ||| ||||||||||||||||||||| |||||||||||||  |    
T  38359050 ttaaacatctaaaataagtaagttttcatgaaaaagatgggtaatcgttactttatcaaaattaacatcttatatttctaagataaaatttttatttata 38359149  T
Q  285 gattccctaaccattgc 301  Q
    |||||| ||||||||||    
T  38359150 gattccttaaccattgc 38359166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 50958863 - 50958996
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| ||||||||| |||||| |||| |||||||| |||||||||||||  |||||  |||||||||| ||||||||| |||||||||||| ||||||||    
T  50958863 ttaagcatccaaaacaagtaagtttttatgaaaaaattgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaatttctatttgaa 50958962  T
Q  285 gattccctaaccattgctttaaaggcactggtta 318  Q
     ||||  ||| ||||||  ||| | |||||||||    
T  50958963 aattctttaatcattgccctaaggacactggtta 50958996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 48338782 - 48338912
Alignment:
Q  152 aggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    ||||||||||||||||||| |||| ||| | || |||| ||||||||| |||||| |||| || ||||||||||||||| |||  || ||  ||||||||    
T  48338782 aggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataac 48338881  T
Q  251 atcttatatttctaagacaaaatttttattt 281  Q
    |||||||||||| |||| ||||||| |||||    
T  48338882 atcttatatttccaagataaaatttctattt 48338912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 53818820 - 53818932
Alignment:
Q  176 gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||| ||||||||  |||||  ||||||| || |||||| || || |||||||||    
T  53818820 gggtattgattaagcatccaaaataaataagttttaatgaaaaagttgtataatcattacttgattaaaaataa-attttatatctccaaaacaaaattt 53818918  T
Q  276 ttatttgaagattc 289  Q
    ||||||| ||||||    
T  53818919 ttatttgtagattc 53818932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 55446736 - 55446839
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| |||| |||||| |||| || |||||||||||||||||||  || ||  ||| |||||||||||||||| ||||||||||||||||||| |    
T  55446736 ttaaacatctaaaagaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgta 55446834  T
Q  285 gattc 289  Q
    |||||    
T  55446835 gattc 55446839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 299
Target Start/End: Original strand, 44698189 - 44698335
Alignment:
Q  154 gagaatgctaactagtgtt-ctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacat 252  Q
    ||||||||||||||||||| || | | | || ||||| ||| |||| || ||| |||| |||||||| ||||||||||||| ||| ||  ||| ||||||    
T  44698189 gagaatgctaactagtgtttctggagcaatggttaaatatctaaaacaaataagtttttatgaaaaaattgtgtaatcattattttatcaaaagtaacat 44698288  T
Q  253 cttatatttctaagacaaaatttttatttgaagattccctaaccatt 299  Q
    |||||||||  |||||||||||| |||||| ||||| | ||||||||    
T  44698289 cttatattttcaagacaaaatttctatttgtagatttcttaaccatt 44698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 29032408 - 29032505
Alignment:
Q  178 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    |||||||||||  ||| |||| ||| || |||| ||||||||||||||||||||||  |||||  ||| ||||||||||||||| |||||||||||||    
T  29032408 gtattgattaagtatctaaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaattt 29032505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 31494115 - 31494030
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaa 270  Q
    |||||||||||||| |||||| |||| |||||||| ||||||||||||| ||||||  ||| |||| ||||||||||| |||||||    
T  31494115 ttaaacatccaaaacaagtaagtttttatgaaaaaattgtgtaatcattatttgattaaaattaacttcttatatttccaagacaa 31494030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 318
Target Start/End: Complemental strand, 6785915 - 6785771
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaa-gttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaat 273  Q
    ||||||||| ||||||||| |||| ||| || ||||||||||||| | ||||||||||||  |||||  ||| |||||| ||||||||  |||||||||     
T  6785915 agggtattggttaaacatcaaaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaa 6785816  T
Q  274 ttttatttgaagattccctaaccattgctttaaaggcactggtta 318  Q
    || |||||| ||| ||| ||||||||||  | | |||||||||||    
T  6785815 ttctatttgtagaatccttaaccattgccctgagggcactggtta 6785771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 290
Target Start/End: Complemental strand, 11676865 - 11676741
Alignment:
Q  167 agtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaa 265  Q
    ||||||||| ||| |||| |||||||||||||| ||| || |||||| |||||| |||||| |||||| ||||||  ||| |||| |||| |||||  ||    
T  11676865 agtgttctaagggcattggttaaacatccaaaacaagcaagttttcaagaaaaaattgtgttatcattatttgatcaaaagtaacgtcttttattttcaa 11676766  T
Q  266 gacaaaatttttatttgaagattcc 290  Q
    |||||||||| |||||| |||||||    
T  11676765 gacaaaatttatatttgtagattcc 11676741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 28709693 - 28709560
Alignment:
Q  168 gtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaaga 267  Q
    |||||| || |||||| |||| ||| |||||||||||| |||  || |||||||||| |||||||| ||||||  ||| |||||| ||||||||  ||||    
T  28709693 gtgttcaagagtattggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaaga 28709594  T
Q  268 caaaatttttatttgaagattccctaaccattgc 301  Q
     ||||||| |||||  ||||||  ||||||||||    
T  28709593 taaaatttctatttatagattctttaaccattgc 28709560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 47334863 - 47334959
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    ||||||||  |||| || |||||||| ||  |||||||||||||||||| ||| ||| |||||||  |||||||||| ||||||||||||| |||||    
T  47334863 ttaaacatttaaaacaaataaatttttattgaaaagttgtgtaatcattattttataaaaaataaagtcttatatttttaagacaaaatttctattt 47334959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 4020109 - 4020216
Alignment:
Q  193 ccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccct 292  Q
    |||||| |||||| |||| |||||||| ||||||||| |||  || ||  ||| |||||| ||||||||  |||||||||||| |||||| ||||||| |    
T  4020109 ccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctatttgtagattcctt 4020208  T
Q  293 aaccattg 300  Q
    ||||||||    
T  4020209 aaccattg 4020216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 300
Target Start/End: Complemental strand, 635825 - 635700
Alignment:
Q  175 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 274  Q
    |||| |||| |||| ||||||||| |  ||| |||| ||  |||||||||||||||||| ||| ||  ||| ||||||||||| | |  |||||||||||    
T  635825 agggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatt 635726  T
Q  275 tttatttgaagattccctaaccattg 300  Q
    | |||||| ||||||| |||||||||    
T  635725 tctatttgtagattccttaaccattg 635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 49261783 - 49261880
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttg 282  Q
    |||| ||||||||| ||||| |||||||||||||| ||||||||| |||  |  ||  ||| |||||||||||||||  |||||||||||| ||||||    
T  49261783 ttaagcatccaaaacaagtacattttcatgaaaaaattgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttctatttg 49261880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 8326171 - 8326243
Alignment:
Q  216 aaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagatt 288  Q
    |||||| |||||||||||| |||||  ||| |||||| |||||||| ||| ||||||||| ||||||||||||    
T  8326171 aaaagtggtgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttctatttgaagatt 8326243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 34146019 - 34145920
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    ||||||||| |||||||||  |||||||||| ||||| || |||| |||| |||  |||||  |||||||||||||||||||| || ||||||||| |||    
T  34146019 attgattaagcatccaaaactagtaaatttt-atgaacaaattgtataattattacttgatcaaaaataacatcttatatttccaacacaaaatttatat 34145921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 300
Target Start/End: Complemental strand, 1712068 - 1711919
Alignment:
Q  152 aggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    |||||||||||||| ||||| ||| |||||||| ||||||| | |||||||||||||||| |  ||||| | || |||| |||  ||  |  ||  ||||    
T  1712068 aggagaatgctaaccagtgtactaagggtattggttaaacaactaaaataagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaac 1711969  T
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 300  Q
    |||||||||||  |||||||||||| || ||  ||||||| |||||||||    
T  1711968 atcttatattttcaagacaaaatttataattttagattccttaaccattg 1711919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 4128803 - 4128727
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 261  Q
    |||| ||||||||| |||||| ||||||||||||  |||||||||||||  || ||  ||||||| |||||||||||    
T  4128803 ttaagcatccaaaacaagtaagttttcatgaaaatattgtgtaatcattactttatcaaaaataatatcttatattt 4128727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 49543174 - 49543305
Alignment:
Q  152 aggagaatgctaactagtgttctagggt-attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    ||||||||| ||| |||||| ||| ||  |||| |||| ||| |||||  |||||||||||||||||||  |||||||| |||  || ||| ||||| |     
T  49543174 aggagaatgttaattagtgtcctaaggacattggttaagcattcaaaacgagtaaattttcatgaaaaaagtgtgtaataattacttaatataaaatgat 49543273  T
Q  251 atcttatatttctaagacaaaatttttatttg 282  Q
    |||||||||||  |||| ||||||| ||||||    
T  49543274 atcttatattttaaagataaaatttctatttg 49543305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 25319461 - 25319562
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| ||||||||| |||| || ||| |||| ||| ||||| |||||||||||| |||  |  ||| |||||| ||||||||  || |||||||||||||    
T  25319461 attggttaaacatctaaaacaattaagttttaatgtaaaaggtgtgtaatcattatttagtcaaaagtaacattttatattttcaatacaaaatttttat 25319560  T
Q  280 tt 281  Q
    ||    
T  25319561 tt 25319562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 31904734 - 31904766
Alignment:
Q  243 aaaataacatcttatatttctaagacaaaattt 275  Q
    ||||||| |||||||||||||||||||||||||    
T  31904734 aaaataaaatcttatatttctaagacaaaattt 31904766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 1309839 - 1309720
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||||||  || ||||||| ||| |||| | |||||||| ||||| ||||||| |||    
T  1309839 attggttaaacatccaaaataaataaatttttatgaaaaaattgtgtaatagttatttgataaaaagtaacgtattatatttttaagataaaatttctat 1309740  T
Q  280 ttgaagattccctaaccatt 299  Q
    ||| ||||||| ||||||||    
T  1309739 ttgtagattccttaaccatt 1309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 8896698 - 8896568
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 294  Q
    |||| |||||| ||||||||||||| |||||||||||||   ||||  ||| ||||||||||||||| ||||||||||||| |||||| ||||||  |||    
T  8896698 aaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaa 8896599  T
Q  295 ccattgctttaaaggcactggttaacaaaac 325  Q
     ||||| | | | ||||||||||||||||||    
T  8896598 acattgttgtgagggcactggttaacaaaac 8896568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 43626350 - 43626453
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| ||||||| |||||||| |||||||| ||||||||| |||  || ||| |||||||||||| || |||  |||||||||||||||||||||    
T  43626350 ttaaacatctaaaataaataaatttttatgaaaaaattgtgtaattattactttataaaaaataacatctaattttttcaagacaaaatttttatttgaa 43626449  T
Q  285 gatt 288  Q
    ||||    
T  43626450 gatt 43626453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 23142797 - 23142660
Alignment:
Q  152 aggagaatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaa-gttgtgtaatcattgtttgatagaaaataa 249  Q
    ||||||||| |||| ||||| || || | |||| ||||||||||||||||||||| |||| |||||||| |||||||||| |||  |||||  |||||||    
T  23142797 aggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataa 23142698  T
Q  250 catcttatatttctaagacaaaatttttatttgaagatt 288  Q
    ||||||||||||| || ||||||||| |||||| |||||    
T  23142697 catcttatatttccaa-acaaaatttctatttgtagatt 23142660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 37928274 - 37928420
Alignment:
Q  157 aatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatctt 255  Q
    ||||||||||||||| || |||  |||| ||||||||||||||||||||| |||| || ||||||||||||||| |||  || ||  |||||||||| ||    
T  37928274 aatgctaactagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatttt 37928373  T
Q  256 atatttctaagacaaaatttttatttgaagattccctaaccattgct 302  Q
    ||||||  |||| ||||||| |||||  ||||||  |||||||||||    
T  37928374 atattttcaagataaaatttatatttatagattctttaaccattgct 37928420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 16979912 - 16980035
Alignment:
Q  153 ggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataaca 251  Q
    |||||||||||||| ||| |||| ||| |||| |||| ||||||||| ||||||||||| ||||||||||||||| || |||  | |||  ||| |||||    
T  16979912 ggagaatgctaactggtgctctaagggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaaca 16980011  T
Q  252 tcttatatttctaagacaaaattt 275  Q
    ||||||||||  ||||||||||||    
T  16980012 tcttatattttcaagacaaaattt 16980035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 31487826 - 31487725
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    ||||| ||||||||||||||||| ||| |||| | |||||| ||||||||| |||  || ||| |||||||||||||||||||| |||| ||||||| ||    
T  31487826 tattggttaaacatccaaaataaataagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagataaaatttcta 31487727  T
Q  279 tt 280  Q
    ||    
T  31487726 tt 31487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 34993241 - 34993148
Alignment:
Q  182 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    ||||||| |||| |||  |||||| ||||||||||||||||||||||| ||| ||| ||  ||| ||||||||||||||| |||||||||||||    
T  34993241 tgattaagcatctaaatcaagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 31850836 - 31850762
Alignment:
Q  207 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 281  Q
    |||| |||||||| || |||||||||| ||| ||  ||| |||||||||||||||||||||||||||||||||||    
T  31850836 tttttatgaaaaaattatgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttattt 31850762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 8746149 - 8746234
Alignment:
Q  195 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatt 280  Q
    ||||||||||| |||| ||||||||||||| |||||||| ||||||  ||| ||||||  |||||||  |||||||||||||||||    
T  8746149 aaaataagtaagtttttatgaaaaagttgtataatcattatttgatcaaaagtaacattctatatttacaagacaaaatttttatt 8746234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 16685728 - 16685848
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatg-aaaaagttgtgtaatcattgtttgatagaaaa-taacatcttatatttctaagacaaaatttt 276  Q
    ||||| |||| |||||||||||||||| |||| ||  |||||||||||||||||||  |||||  || | |||||||||||||||| ||||||||| ||     
T  16685728 tattggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttc 16685827  T
Q  277 tatttgaagattccctaacca 297  Q
    |||| | ||||||| ||||||    
T  16685828 tattagtagattccttaacca 16685848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 17659964 - 17660084
Alignment:
Q  179 tattgattaaacatccaaaataagtaaattttcatg-aaaaagttgtgtaatcattgtttgatagaaaa-taacatcttatatttctaagacaaaatttt 276  Q
    ||||| |||| |||||||||||||||| |||| ||  |||||||||||||||||||  |||||  || | |||||||||||||||| ||||||||| ||     
T  17659964 tattggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttc 17660063  T
Q  277 tatttgaagattccctaacca 297  Q
    |||| | ||||||| ||||||    
T  17660064 tattagtagattccttaacca 17660084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 30027931 - 30028041
Alignment:
Q  150 gtaggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaata 248  Q
    |||||||||||||||| |||||  || ||||| || ||||||||||| || ||||||  ||||||||||||||||||| ||||||  || ||  ||| ||    
T  30027931 gtaggagaatgctaaccagtgtcataagggtaatggttaaacatccataacaagtaagatttcatgaaaaagttgtgtgatcattactttatcaaaagta 30028030  T
Q  249 acatcttatat 259  Q
    |||||||||||    
T  30028031 acatcttatat 30028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 43118809 - 43118946
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    |||| ||||||||| |||||| |||| |||||||| ||| ||||| | | ||||||  ||  |||||||| ||||||  |||||||||||| |||||| |    
T  43118809 ttaatcatccaaaacaagtaagttttaatgaaaaaattgcgtaattactatttgatcaaatgtaacatctcatattttcaagacaaaatttatatttgta 43118908  T
Q  285 gattccctaaccattgctttaaaggcactggttaacaa 322  Q
    |||| | ||||||||||  |  |||||| |||||||||    
T  43118909 gatttcttaaccattgccctggaggcaccggttaacaa 43118946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 34993147 - 34993092
Alignment:
Q  246 ataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 301  Q
    ||||||||||||||||  |||||||||||| |||||| ||||||| ||||||||||    
T  34993147 ataacatcttatattttcaagacaaaatttatatttgtagattccttaaccattgc 34993092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 1554067 - 1554025
Alignment:
Q  247 taacatcttatatttctaagacaaaatttttatttgaagattc 289  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  1554067 taacatcttatatttctaagacaacatttttatttgtagattc 1554025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 19676965 - 19677110
Alignment:
Q  153 ggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataaca 251  Q
    ||||||||||||||||||  | | ||| |||| |||| ||||| ||| ||| || ||||  || ||||| ||||||||||||  || ||  ||| |||||    
T  19676965 ggagaatgctaactagtgccccaagggcattggttaagcatcctaaacaagcaagttttggtgtaaaaggtgtgtaatcattacttaatcaaaagtaaca 19677064  T
Q  252 tcttatatttctaagacaaaatttttatttgaagattccctaacca 297  Q
    ||||||||||  |||||||||||| ||||||  |||||| ||||||    
T  19677065 tcttatattttcaagacaaaatttctatttgtcgattccttaacca 19677110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 25530650 - 25530541
Alignment:
Q  190 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattc 289  Q
    ||||||||| || ||| |||| |||||||| |||||||||||||  || ||  ||  |||||| |||||||||||||| ||||||| ||||| || ||||    
T  25530650 catccaaaacaaataagtttttatgaaaaaattgtgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctatttaaaaattc 25530551  T
Q  290 cctaaccatt 299  Q
      ||||||||    
T  25530550 tttaaccatt 25530541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 1521311 - 1521261
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgt 235  Q
    |||||||||||||| |||||| ||| ||||||||| ||| |||||||||||    
T  1521311 ttaaacatccaaaacaagtaagtttccatgaaaaaattgcgtaatcattgt 1521261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 12810291 - 12810161
Alignment:
Q  151 taggagaatgctaactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    |||||||||| ||||  |||| | |||| | || ||||||||| |||| ||| |   |||||||||||||||||||||| |||  ||  |  ||| |||     
T  12810291 taggagaatgttaaccggtgtccaagggcaatggttaaacatctaaaacaagcatgctttcatgaaaaagttgtgtaattattactttgtcaaaagtaat 12810192  T
Q  251 atcttatatttctaagacaaaatttttattt 281  Q
    ||||||||||| |||||||||||||| ||||    
T  12810191 atcttatatttttaagacaaaattttcattt 12810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 42888306 - 42888420
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 284  Q
    ||||||||| ||||||||||| |||||||  |||| ||||| |||||||  || ||  |||  ||||||||||||||  |||  ||||  |||||||| |    
T  42888306 ttaaacatctaaaataagtaagttttcatagaaaatttgtgcaatcattactttatcaaaagcaacatcttatattttcaagttaaaaaatttatttgta 42888405  T
Q  285 gattccctaaccatt 299  Q
    |||||| ||||||||    
T  42888406 gattccttaaccatt 42888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 22931973 - 22931924
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 229  Q
    |||| ||||||| ||||||||||||||||||||  ||||||| |||||||    
T  22931973 attggttaaacaaccaaaataagtaaattttcaataaaaagtagtgtaat 22931924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 27235256 - 27235349
Alignment:
Q  185 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 278  Q
    |||||||||||||| ||| || ||||||   |||| |  |||||||||| |||  || |||||||||  ||||||||| |||||||||||||||    
T  27235256 ttaaacatccaaaacaagaaagttttcacacaaaaatgatgtaatcattatttagtaaaaaataacactttatatttccaagacaaaattttta 27235349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 23080723 - 23080659
Alignment:
Q  197 aataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 261  Q
    ||||| |||||||| |||||||| || ||||||||||  |||||  ||| |||||||||||||||    
T  23080723 aataaataaatttttatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatattt 23080659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 51644 - 51764
Alignment:
Q  180 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 279  Q
    |||| ||||||||||||||||| |||||||| |||||||| || ||||||||||  || ||  ||| |||||| ||||||||| ||||||||| ||||||    
T  51644 attggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttat 51743  T
Q  280 ttgaagattccctaaccattg 300  Q
    ||| | ||||| |||||||||    
T  51744 ttgtaaattccttaaccattg 51764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 36565 - 36668
Alignment:
Q  215 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgctttaaaggcactg 314  Q
    |||||||||| |||||||| ||| ||  ||| |||||||||||||||  || |||||||||||||||||||||||  ||| |||| | |||||||||| |    
T  36565 aaaaagttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttgaagattctttaatcattaccttaaaggcaccg 36664  T
Q  315 gtta 318  Q
    ||||    
T  36665 gtta 36668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 120638 - 120789
Alignment:
Q  152 aggagaatgctaactagtgttctaggg-tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 250  Q
    |||| |||| |||| ||||||||| || || || ||||||||||||||||||||| ||||  || |||||||||| |||| ||  || |   ||| | ||    
T  120638 aggacaatgttaaccagtgttctaaggataatggttaaacatccaaaataagtaagtttttgtggaaaagttgtgcaatcgttactttaccaaaagtgac 120737  T
Q  251 atcttatatttctaagacaaaatttttatttgaagattccctaaccattgct 302  Q
    |||||||||||  |||||||||||| |||||| ||||||| |||||||||||    
T  120738 atcttatattttcaagacaaaatttctatttgtagattccttaaccattgct 120789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 15485 - 15380
Alignment:
Q  176 gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 275  Q
    |||||||| |||||||| |||||||||||| |||| ||||||||  ||| ||||| ||  ||| |  ||| |||||||||||||||  ||||||||| ||    
T  15485 gggtattggttaaacattcaaaataagtaagtttttatgaaaaatgtgtataatcgttacttggtcaaaagtaacatcttatattttcaagacaaaaatt 15386  T
Q  276 ttattt 281  Q
     |||||    
T  15385 ctattt 15380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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