View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10353_low_20 (Length: 281)
Name: NF10353_low_20
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 35921684 - 35921951
Alignment:
| Q |
1 |
tgagtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagtctaagtaaacttgttgagcttctgtagactcgactagtaaaagtgagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35921684 |
tgagtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagtctaagtaaacttgttgagcttctgtagactcgactagtaaaagtcagagt |
35921783 |
T |
|
| Q |
101 |
ttccaattttattattttacttaaactcgtaaaagtttacaaaacagtgagtgcgtatgtgagttaannnnnnnnatgaatcataattgtaagaaggtac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
35921784 |
ttccaattttattattttacttaaactcgtaaaagtttacaaaacagtgagtgcgtatgcgagttaattttttttatgaatcataattgtaagaaggtat |
35921883 |
T |
|
| Q |
201 |
gggttagcccgaaagtttaacaacgatggtcataatcatattatcaagagtaaagttcaaatgatgtc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35921884 |
gggttagcccgaaagtttaacaacgatggtcataatcatattatcaagagtaaagttcaaatgatgtc |
35921951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 35915314 - 35915414
Alignment:
| Q |
2 |
gagtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagtctaagtaaacttgttgagcttctgtagactcgactagtaaaagtgagagtt |
101 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||| ||||| | || |||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
35915314 |
gagtttcaaacattatgttgtcaaaatcgaagctttcaaactcgagaggcgaaataaacttgttgagcttctgttgacttgactagtaaaactgagagtt |
35915413 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
35915414 |
t |
35915414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 35915498 - 35915583
Alignment:
| Q |
181 |
tcataattgtaagaaggtacgggttagcccgaaagtttaacaacgatggtcataatcatattatcaagagtaaagttcaaatgatg |
266 |
Q |
| |
|
|||||||||||||| ||| ||||||||| || || |||||||| ||||||| |||||| | ||||| ||||||||||| |||||| |
|
|
| T |
35915498 |
tcataattgtaagactgtaagggttagcctgagagcttaacaaccatggtcagaatcatttcatcaaaagtaaagttcagatgatg |
35915583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 35940668 - 35940743
Alignment:
| Q |
6 |
ttcaaacattatgatgtcaaaattgaagctgacaaacttgagagtctaagtaaacttgttgagcttctgtagactc |
81 |
Q |
| |
|
||||||||||||| |||| ||| ||| || ||||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
35940668 |
ttcaaacattatgttgtcgtaatcgaatttgttaaacttgagaggctaggtaaactttttgagcttctgtagactc |
35940743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University