View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_21 (Length: 268)
Name: NF10353_low_21
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 37538193 - 37538402
Alignment:
| Q |
19 |
acatcaacagggaaaagatatttcatttgtgggataataggacattgcagccaaggaatgaaggttgaaattgacacgcttgccgctcaagtttctcctg |
118 |
Q |
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| T |
37538193 |
acatcaacagggaaaagatatttcatttgtgggacaataggacattgcagccaaggaatgaaggttgaaattgacacgcttgccgctcaagtttctcctg |
37538292 |
T |
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| Q |
119 |
cctcaccagtagcagcagcaccttcaatagcagactctccaatgatttccatcattccctctgcagcacctgcagaatctactgtttcatctgcagaatc |
218 |
Q |
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| T |
37538293 |
cctcaccagtagcagcagcaccttcaatagcagactctccaatgatttccatcattccctctgcagcacctgcagaatctactgtttcatctgcagaatc |
37538392 |
T |
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| Q |
219 |
tcctgaagca |
228 |
Q |
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|||||||||| |
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| T |
37538393 |
tcctgaagca |
37538402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 37538417 - 37538449
Alignment:
| Q |
222 |
tgaagcacaagtggaaagtcctacactctctcc |
254 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37538417 |
tgaagcacaagtggaaagtcctacactctctcc |
37538449 |
T |
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