View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_24 (Length: 252)
Name: NF10353_low_24
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_24 |
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| [»] scaffold0070 (2 HSPs) |
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| [»] scaffold0955 (2 HSPs) |
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Alignment Details
Target: scaffold0070 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 19403 - 19515
Alignment:
| Q |
19 |
catcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcattttttaaaaatcttatttttctaatag |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19403 |
catcgcaatttcctcaacaagttcagcttatgttctgtttgtacaaacatggaaaaatatagacatacttcattttttaaaaatctaatttttctaatag |
19502 |
T |
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| Q |
119 |
ttaatcaaataac |
131 |
Q |
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||||||||||||| |
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| T |
19503 |
ttaatcaaataac |
19515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 38789 - 38866
Alignment:
| Q |
19 |
catcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcatttttt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
38789 |
catcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt |
38866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 25692516 - 25692409
Alignment:
| Q |
23 |
gcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcattttttaaaaatcttatttttctaatagttaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25692516 |
gcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatggaaaaatatagacatacttcattttttaaaaatcttatttttctaatagctaa |
25692417 |
T |
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| Q |
123 |
tcaaataa |
130 |
Q |
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|||||||| |
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| T |
25692416 |
tcaaataa |
25692409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 25384171 - 25384122
Alignment:
| Q |
19 |
catcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacat |
68 |
Q |
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| T |
25384171 |
catcgcaatttcctcaacaagttcagcttctgttctgtttatacaaacat |
25384122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 25389456 - 25389413
Alignment:
| Q |
90 |
attttttaaaaatcttatttttctaatagttaatcaaataacat |
133 |
Q |
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| T |
25389456 |
attttttaaaaatcttatttttctaatagtaaatcaaataacat |
25389413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 25383543 - 25383499
Alignment:
| Q |
186 |
tttcctctcttgttatctaatatacttgagaacttccctttttat |
230 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
25383543 |
tttcctctcttattatctaatatacttgacaacttccctttttat |
25383499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 25645407 - 25645360
Alignment:
| Q |
186 |
tttcctctcttgttatctaata---tacttgagaacttccctttttat |
230 |
Q |
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| T |
25645407 |
tttcctctcttgttatctaataatatacttgagaaattccctttttat |
25645360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 25384122 - 25384082
Alignment:
| Q |
93 |
ttttaaaaatcttatttttctaatagttaatcaaataacat |
133 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| |
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| T |
25384122 |
ttttaaaaatcttaaatttccaatagttaatcaaataacat |
25384082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 3651 - 3574
Alignment:
| Q |
19 |
catcgcaatttcctcaacaagttcagcttctgttctgtttctacaaacatggaaaaatatagacatacttcatttttt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
3651 |
catcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt |
3574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 3464 - 3418
Alignment:
| Q |
87 |
ttcattttttaaaaatcttatttttctaatagttaatcaaataacat |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3464 |
ttcattttttaaaaatcttatttttctaatagttaatcaaataacat |
3418 |
T |
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