View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_27 (Length: 239)
Name: NF10353_low_27
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54904230 - 54904452
Alignment:
| Q |
1 |
gatgtccattgacgtttgaatgccatgtacggaactcgaactttcactttcagaaaacattggtgtctcaaaattgggaatgttatgagactgaagtgga |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54904230 |
gatgtccattgacgtttgaatgccatgtacagaactcgaactttcactttcagaaaacattggtgtctcgaaattgggaatgttatgagactgaagtgga |
54904329 |
T |
|
| Q |
101 |
gggactagtgcagaagaactcattccttccaagttcaaactggatggtgcgttcagccgacaaaacatgtcattggatgcatatgctggcagtgtgctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54904330 |
gggactagtgcagaagaactcattccttccaagttcaaactggacggtgcgttcagccgacaaaacatgtcattggatgcatatgctggcagtatgctgc |
54904429 |
T |
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| Q |
201 |
ttaggactcttgttgatccagat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
54904430 |
ttaggactcttgttgatccagat |
54904452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 54888182 - 54888328
Alignment:
| Q |
75 |
tgggaatgttatgagactgaagtggagggactagtgcagaagaactcattccttccaagttcaaactggatggtgcgttcagccgacaaaacatgtcatt |
174 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| | | |
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| T |
54888182 |
tgggaatgttttgagactgaagtggagggactagtgcagaagaactcattcctctcaagttcaagccagatggtgcgttcaaccgacaaaacatgttact |
54888281 |
T |
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| Q |
175 |
ggatgcatatgctggcagtgtgctgcttaggactcttgttgatccag |
221 |
Q |
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| T |
54888282 |
agatgcatatgttggcaatgtgctgcttaagattcttcttgatccag |
54888328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 54893772 - 54893952
Alignment:
| Q |
41 |
ctttcactttcagaaaacattggtgtctcaaaattgggaatgttatgagactgaagtggagggactagtgcagaagaactcattccttccaagttcaaac |
140 |
Q |
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||||||||| |||||||||| || || ||| || ||||||| |||||||||||||| |||||| ||||||||| |||||||| | |||||||||| |
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| T |
54893772 |
ctttcacttgcagaaaacatcggctgcttgaaactgagaatgttttgagactgaagtggtgggactggtgcagaaggactcattcgtctaaagttcaaac |
54893871 |
T |
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| Q |
141 |
tggatggtgcgttcagccgacaaaacatgtcattggatgcatatgctggcagtgtgctgcttaggactcttgttgatccag |
221 |
Q |
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| T |
54893872 |
tagatggtgcgttcagccgacaaaacatgccactagatgcatatgttggcagtgtgctacttaagattcttcttgatccag |
54893952 |
T |
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