View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10353_low_28 (Length: 228)

Name: NF10353_low_28
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10353_low_28
NF10353_low_28
[»] chr6 (5 HSPs)
chr6 (2-228)||(8701696-8701922)
chr6 (20-228)||(5986736-5986944)
chr6 (27-82)||(21862483-21862538)
chr6 (141-185)||(8701881-8701925)
chr6 (27-130)||(9290729-9290833)
[»] chr7 (5 HSPs)
chr7 (46-141)||(11827984-11828080)
chr7 (27-131)||(21814345-21814450)
chr7 (30-124)||(17921294-17921389)
chr7 (27-82)||(48643539-48643594)
chr7 (27-77)||(44338968-44339018)
[»] chr3 (6 HSPs)
chr3 (27-131)||(16462885-16462990)
chr3 (27-74)||(814533-814580)
chr3 (29-74)||(50297380-50297425)
chr3 (50-133)||(22820945-22821029)
chr3 (27-74)||(814178-814225)
chr3 (32-82)||(46691586-46691636)
[»] chr1 (8 HSPs)
chr1 (27-139)||(3774395-3774509)
chr1 (27-82)||(2071668-2071723)
chr1 (27-82)||(2075198-2075253)
chr1 (27-82)||(9167915-9167970)
chr1 (27-82)||(11993546-11993600)
chr1 (27-69)||(11749751-11749793)
chr1 (49-82)||(15629485-15629518)
chr1 (110-139)||(30435619-30435648)
[»] chr8 (4 HSPs)
chr8 (27-82)||(43615376-43615431)
chr8 (50-133)||(5616870-5616954)
chr8 (27-77)||(20242645-20242695)
chr8 (27-77)||(20250465-20250515)
[»] chr4 (3 HSPs)
chr4 (27-98)||(54148193-54148265)
chr4 (27-125)||(24225970-24226069)
chr4 (27-74)||(16871569-16871616)
[»] chr5 (3 HSPs)
chr5 (27-131)||(24137515-24137621)
chr5 (27-124)||(9512376-9512474)
chr5 (28-127)||(27315171-27315271)
[»] chr2 (4 HSPs)
chr2 (27-82)||(32291072-32291128)
chr2 (29-120)||(42631686-42631777)
chr2 (27-82)||(8986845-8986900)
chr2 (27-124)||(29409166-29409264)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 8701696 - 8701922
Alignment:
Q  2 ttgttcactgttttcaaatttaatatatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgtgatttatcatgagtttaag 101  Q
    |||||| |||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  8701696 ttgttccctgttttcaagtttagtatatattatttagtatgttgtttgtgttttgtttgacaaactcacaatgcttcttgtgatgtatcatgagtttaag 8701795  T
Q  102 gataggcattagataataaagtaatgagctatgctattagtattcaataaaaccctaaccgtctttgttaatctattcgttttttgtatttaatgaaacc 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| ||||||| |||||||||    
T  8701796 gataggcattagataatatagtaatgagctatgctattagtattcaataaaatcctagccgtctttgttaatctgttcgtttattgtattcaatgaaacc 8701895  T
Q  202 ctagccgtctttgttaatctcatcgtt 228  Q
    |||||||||||||||||||||||||||    
T  8701896 ctagccgtctttgttaatctcatcgtt 8701922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 5986944 - 5986736
Alignment:
Q  20 tttaatatatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgtgatttatcatgagtttaaggataggcattagataata 119  Q
    |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  5986944 tttaatatatattatttaatatgttgttcgtattttgtttcacaaactcacaatgcttcttatgatgtatcatgagtttaaggataggcattagataata 5986845  T
Q  120 aagtaatgagctatgctattagtattcaataaaaccctaaccgtctttgttaatctattcgttttttgtatttaatgaaaccctagccgtctttgttaat 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5986844 aagtaatgagctatgctattagtattcaatgaaaccctaaccgtctttgttaatctgttcgttttttgtatttaatgaaaccctagccgtctttgttaat 5986745  T
Q  220 ctcatcgtt 228  Q
    |||||||||    
T  5986744 ctcatcgtt 5986736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 21862483 - 21862538
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || |||||||| |||||||||||||||||||| ||||    
T  21862483 tatattatttagtatgtttttcgtattttgcttgacaaactcacaatgcttcttgt 21862538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 8701881 - 8701925
Alignment:
Q  141 gtattcaataaaaccctaaccgtctttgttaatctattcgttttt 185  Q
    ||||||||| |||||||| ||||||||||||||||  ||||||||    
T  8701881 gtattcaatgaaaccctagccgtctttgttaatctcatcgttttt 8701925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 9290833 - 9290729
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt-gatttatcatgagtttaaggataggcattagataataaagtaa 125  Q
    |||||||||||||||| | || |||||||||   ||||||||||||||||| |||| || | ||  ||||||| ||| |||   |||||||||||||||     
T  9290833 tatattatttagtatgcttttcgtattttgtcaaacaaactcacaatgcttcttgttgactcattgtgagtttgagggtagatgttagataataaagtat 9290734  T
Q  126 tgagc 130  Q
    |||||    
T  9290733 tgagc 9290729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 11828080 - 11827984
Alignment:
Q  46 tttgtattttgtttgacaaactcacaatgcttattgt-gatttatcatgagtttaaggataggcattagataataaagtaatgagctatgctattag 141  Q
    ||||||||||| || ||||||||||||||||| |||| |||  ||||||||||| ||| ||||  |||||||||||||||||| |||||||||||||    
T  11828080 tttgtattttgatttacaaactcacaatgcttcttgttgatgcatcatgagttttagggtaggtgttagataataaagtaatgggctatgctattag 11827984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 21814345 - 21814450
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaa 125  Q
    |||||||||||||||| | ||  |||| ||||||||||||||||||||||| ||| || |  ||||||||||| ||| ||||| |||||||||||||||     
T  21814345 tatattatttagtatgtttttcatattctgtttgacaaactcacaatgcttcttgttgttgcatcatgagtttgagggtaggcgttagataataaagtat 21814444  T
Q  126 tgagct 131  Q
    ||||||    
T  21814445 tgagct 21814450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 17921389 - 17921294
Alignment:
Q  30 attatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagta 124  Q
    ||||||||||||| | || ||||||||||||||||||||||| || || | | ||||  ||||||||||||||| |||| ||||||||||||||||    
T  17921389 attatttagtatgtttttcgtattttgtttgacaaactcacattgtttctggttgatgcatcatgagtttaagggtaggtattagataataaagta 17921294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 48643539 - 48643594
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || ||||||| |||||||||||||||||| |||||||    
T  48643539 tatattatttagtatgtttttcgtattttatttgacaaactcacaatgtttattgt 48643594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 44338968 - 44339018
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgctt 77  Q
    ||||||| |||||||  | || |||||||||||||||||||||||||||||    
T  44338968 tatattacttagtatatttttcgtattttgtttgacaaactcacaatgctt 44339018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 16462885 - 16462990
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaa 125  Q
    |||||||||||||||| | ||  |||| ||||||||||||||||||||||| ||| || |  ||||||||||| ||| ||||| |||||||||||||||     
T  16462885 tatattatttagtatgtttttcatattctgtttgacaaactcacaatgcttcttgttgttgcatcatgagtttgagggtaggcgttagataataaagtat 16462984  T
Q  126 tgagct 131  Q
    ||||||    
T  16462985 tgagct 16462990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 814580 - 814533
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatg 74  Q
    |||||||||||||||| | || ||||||||||||||||||||||||||    
T  814580 tatattatttagtatgtttttcgtattttgtttgacaaactcacaatg 814533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 50297380 - 50297425
Alignment:
Q  29 tattatttagtatggtgtttgtattttgtttgacaaactcacaatg 74  Q
    |||||||||||||| | || ||||||||||||||||||||||||||    
T  50297380 tattatttagtatgtttttcgtattttgtttgacaaactcacaatg 50297425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 22821029 - 22820945
Alignment:
Q  50 tattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaatgagctat 133  Q
    |||||||||||||||||||||||||||| ||| | ||  ||||| ||||| ||  || |  ||||||||||||||||||||||||    
T  22821029 tattttgtttgacaaactcacaatgcttcttgtttatgcatcattagtttgagagtaagttttagataataaagtaatgagctat 22820945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 814178 - 814225
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatg 74  Q
    |||||||||||||||| | || ||||||||||||||||| ||||||||    
T  814178 tatattatttagtatgttcttcgtattttgtttgacaaagtcacaatg 814225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 46691636 - 46691586
Alignment:
Q  32 tatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    ||||||||||| | || ||||||||||| ||||||||||||||||| ||||    
T  46691636 tatttagtatgtttttcgtattttgtttaacaaactcacaatgcttcttgt 46691586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 3774509 - 3774395
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaa 125  Q
    |||||| |||| |||| | || ||||||||||||||||||||||||||||| ||| ||||  ||||||||||| ||| |||   ||||||||||||||||    
T  3774509 tatattttttaatatgtttttggtattttgtttgacaaactcacaatgcttcttgttgatgaatcatgagtttgagggtagatgttagataataaagtaa 3774410  T
Q  126 t-gagctatgctatt 139  Q
    | || ||||||||||    
T  3774409 tggatctatgctatt 3774395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 2071723 - 2071668
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || ||||||||||||||||||||| ||||||| ||||    
T  2071723 tatattatttagtatgtttttcgtattttgtttgacaaactcagaatgcttcttgt 2071668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 2075253 - 2075198
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || ||||||||||||||||||||| ||||||| ||||    
T  2075253 tatattatttagtatgtttttcgtattttgtttgacaaactcagaatgcttcttgt 2075198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 9167970 - 9167915
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    ||||||||||||| || | || ||||||| ||||||||||||||||||||| ||||    
T  9167970 tatattatttagtttgtttttcgtattttatttgacaaactcacaatgcttcttgt 9167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 11993546 - 11993600
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||||||| ||||    
T  11993546 tatattatttagtatgtt-ttcgtattttatttgacaaactcacaatgcttcttgt 11993600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 11749793 - 11749751
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactca 69  Q
    |||||||||||||||| |  |||||||||||||||||||||||    
T  11749793 tatattatttagtatgtttattgtattttgtttgacaaactca 11749751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 15629518 - 15629485
Alignment:
Q  49 gtattttgtttgacaaactcacaatgcttattgt 82  Q
    ||||||||||||||||||||||||||||| ||||    
T  15629518 gtattttgtttgacaaactcacaatgcttcttgt 15629485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 30435619 - 30435648
Alignment:
Q  110 ttagataataaagtaatgagctatgctatt 139  Q
    ||||||||||||||||||||||||||||||    
T  30435619 ttagataataaagtaatgagctatgctatt 30435648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 43615376 - 43615431
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || ||||||||||||||||||||||||||||| ||||    
T  43615376 tatattatttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgt 43615431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 5616870 - 5616954
Alignment:
Q  50 tattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaatgagctat 133  Q
    |||||||||||||||||||||||||||| ||| | ||  ||||| ||||| ||  || |  ||||||||||||||||||||||||    
T  5616870 tattttgtttgacaaactcacaatgcttcttgtttatgcatcattagtttgagagtaagttttagataataaagtaatgagctat 5616954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 20242645 - 20242695
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgctt 77  Q
    ||||||| |||||||  | || |||||||||||||||||||||||||||||    
T  20242645 tatattacttagtatatttttcgtattttgtttgacaaactcacaatgctt 20242695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 20250515 - 20250465
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgctt 77  Q
    ||||||| |||||||  | || |||||||||||||||||||||||||||||    
T  20250515 tatattacttagtatatttttcgtattttgtttgacaaactcacaatgctt 20250465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 54148193 - 54148265
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagttt 98  Q
    ||||||||||| |||| | || ||||||||||||||||||||||||||||| ||| ||||  |||||||||||    
T  54148193 tatattatttactatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgatgcatcatgagttt 54148265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 24225970 - 24226069
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaa 125  Q
    |||||||||||||||  | || |||||||||||||||||| ||||||| || ||| ||||  ||||||||||| ||| || |  ||||||||||||||||    
T  24225970 tatattatttagtatatttttcgtattttgtttgacaaacccacaatgattcttgttgatgcatcatgagtttgagggtaagtgttagataataaagtaa 24226069  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 16871569 - 16871616
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatg 74  Q
    |||||||||||||||| | || ||||||||||||||||||||| ||||    
T  16871569 tatattatttagtatgtttttcgtattttgtttgacaaactcagaatg 16871616  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 24137515 - 24137621
Alignment:
Q  27 tatattatttagtatggtgttt-gtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagta 124  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||||| ||| ||| ||||| ||  ||||||| ||| |||   ||||| |||||||||    
T  24137515 tatattatttagtatgttttttcgtattttgtttgacaaactcacaatccttcttgttgattcattgtgagtttgagggtagattttagacaataaagta 24137614  T
Q  125 atgagct 131  Q
     ||||||    
T  24137615 ttgagct 24137621  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 9512376 - 9512474
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagta 124  Q
    |||||||||||||||| | ||  |||||||| ||||||||||||||| ||| ||| ||||  ||||||||||| ||| |||   |||||| ||||||||    
T  9512376 tatattatttagtatgtttttcatattttgtatgacaaactcacaatacttcttgttgatgcatcatgagtttgagggtagatgttagatgataaagta 9512474  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 27315171 - 27315271
Alignment:
Q  28 atattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagtaat 126  Q
    |||||||||| |||  | || ||||||||||||||||||||  ||| ||| ||| ||||  ||||||||||| ||| |||   |||||||||||||||||    
T  27315171 atattatttaatatatttttggtattttgtttgacaaactcgtaatacttcttgttgatgcatcatgagtttgagggtagttgttagataataaagtaat 27315270  T
Q  127 g 127  Q
    |    
T  27315271 g 27315271  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 32291072 - 32291128
Alignment:
Q  27 tatattatttagtatggtgttt-gtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | ||| ||||||||||||||||||| ||||||||| ||||    
T  32291072 tatattatttagtatgttttttcgtattttgtttgacaaactaacaatgcttcttgt 32291128  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 42631777 - 42631686
Alignment:
Q  29 tattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataa 120  Q
    |||||||||||||| | | | ||||||||||||||||||||||||| || ||| ||||  ||||||||||||| |||| |  |||||||||||    
T  42631777 tattatttagtatgctttct-tattttgtttgacaaactcacaatgtttcttgttgatcaatcatgagtttaaagataagtgttagataataa 42631686  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 8986845 - 8986900
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattgt 82  Q
    |||||||||||||||| | || ||||||||| ||||||||||| ||||||| ||||    
T  8986845 tatattatttagtatgtttttcgtattttgtatgacaaactcagaatgcttcttgt 8986900  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 29409264 - 29409166
Alignment:
Q  27 tatattatttagtatggtgtttgtattttgtttgacaaactcacaatgcttattg-tgatttatcatgagtttaaggataggcattagataataaagta 124  Q
    |||||| ||||||||| | ||  ||||||||||||||| |||||| |||||  || ||||  ||||||||||| ||| ||||  |||||||||||||||    
T  29409264 tatattgtttagtatgtttttcatattttgtttgacaagctcacagtgcttcgtgttgatgcatcatgagtttgagggtaggtgttagataataaagta 29409166  T

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