View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_29 (Length: 227)
Name: NF10353_low_29
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_29 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54903746 - 54903972
Alignment:
| Q |
1 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
100 |
Q |
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| T |
54903746 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
54903845 |
T |
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| Q |
101 |
ttcctccaaaggaacagcaaccatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcc |
200 |
Q |
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| T |
54903846 |
ttcctccaaaggaacagcaacaatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcc |
54903945 |
T |
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| Q |
201 |
tcactcaatggaacagaattggaagca |
227 |
Q |
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| T |
54903946 |
tcactcaatggaacagaattggaagca |
54903972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 54887603 - 54887718
Alignment:
| Q |
1 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
100 |
Q |
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| T |
54887603 |
aatccaaggtattgttgaaggaagaacccacattttgctgatgcgtgtaacatgaagccgttacaacactcccaagtaatccatcttgacattgcatcgt |
54887702 |
T |
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| Q |
101 |
ttcctccaaaggaaca |
116 |
Q |
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| T |
54887703 |
ttcctctaaaggaaca |
54887718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 54893232 - 54893352
Alignment:
| Q |
3 |
tccaaggtattgttgaaggaagaactcgcattttgatgttg---tgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattg |
99 |
Q |
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| T |
54893232 |
tccaaggtattgttgaaggaagagctgacattttgctgctgcgtcgtgtaacatgaagcctttacaacattcccaagtaagccatcttgacattgcatcg |
54893331 |
T |
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| Q |
100 |
tttcctccaaaggaacagcaa |
120 |
Q |
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| T |
54893332 |
cttcctccgaaggaacagcaa |
54893352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 54887764 - 54887850
Alignment:
| Q |
141 |
tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagca |
227 |
Q |
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| T |
54887764 |
tgagaactgagtgaggcaaactttaagctattgtgagatatttgatcattattaaaatcctcactcaatggagaaggattggaagca |
54887850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 54893388 - 54893474
Alignment:
| Q |
141 |
tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagca |
227 |
Q |
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| T |
54893388 |
tgagaactgggagaggcaaaatttaagctattgccagaaatttgatcattgttaaaatcctcactcaatggagaaggattggaagca |
54893474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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