View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_3 (Length: 433)
Name: NF10353_low_3
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 212 - 417
Target Start/End: Original strand, 39689128 - 39689333
Alignment:
| Q |
212 |
ggagtaattggatattagtccttaattgtaggactgtaataacaacatgtccccccacactatcaatattctaaatgatcaccgaaattgcataatgtta |
311 |
Q |
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| T |
39689128 |
ggagtaattggatattagtccttaattgtaggactgtaataacaacatgtccccccacactatcaatattctaaatgatcactgaaattgcataatgtta |
39689227 |
T |
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| Q |
312 |
atcaacttcgccgatttgtatgtataggttatcaatgcatctctgacattttgcacttagtttcaaattaattccagcaccctaatgacattatagtcct |
411 |
Q |
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| T |
39689228 |
atcaacttcgccgatttgtatgtataggttttcaatgcatctctgacattttgcacttagtttcaaattaattccagcaccctaatgacattatagtcct |
39689327 |
T |
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| Q |
412 |
acaaat |
417 |
Q |
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|||||| |
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| T |
39689328 |
acaaat |
39689333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 39688934 - 39689056
Alignment:
| Q |
18 |
cacagattttacatttttgccagtcgtgttcgtgcagccaaatcgaacaccttttgctataagggcatatgcctgaagagcactcaacagaaagaatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39688934 |
cacagattttacatttttgccagtcgtgttcgtgcagccaaatcgaacaccttttgctataagggcatatgcctgaagagcactcaacagaaagaatata |
39689033 |
T |
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| Q |
118 |
tcatacttactaacaaactcagt |
140 |
Q |
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| T |
39689034 |
tcatacttactaacaaactcagt |
39689056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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