View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_4 (Length: 425)
Name: NF10353_low_4
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 58 - 410
Target Start/End: Original strand, 12118755 - 12119103
Alignment:
| Q |
58 |
agatagataaaacatgcgaagattgcggagtacctggagacaaaggaggagatgaaggaatcagggtccttagacttgaaagctctaagaaaggaccaca |
157 |
Q |
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| T |
12118755 |
agatagataaaatattcgaagattgcggagtacctcgagacaaaggaggagatgaaggaatcagggtccttagacttgaaagctctaagaaaggaccaca |
12118854 |
T |
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| Q |
158 |
tgttacctacgaagggccatcccatgtcaccaggtggtagagagtactgcttcacacctaatttggattcatagagccaccaatttacatttttgagaat |
257 |
Q |
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| T |
12118855 |
tgttaccaatgaagggccatcccatgtcaccaggtggtagagagtactgcttcacacctaatttggattcatagagccaccaatttacatttttgagaat |
12118954 |
T |
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| Q |
258 |
ggatcttaagactaaaagaccaccaccaatggccataaggaccacccacatggaatccatctctaaaatcatcaccaaacttcaattcaagctacctagc |
357 |
Q |
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| T |
12118955 |
ggatcttaagactaaaagaccaccaccaatggccataaggaccacccacatggaacccatctctaaaatcatcaccaaacttcaattcaagctac----c |
12119050 |
T |
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| Q |
358 |
tcactcaattgactcaacactctttatgtccttcactctttttctatgtattt |
410 |
Q |
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| T |
12119051 |
tcactcaattgactcaacactctttatgtccttcactctttttctatgtattt |
12119103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 12118679 - 12118731
Alignment:
| Q |
14 |
agaccataaatagataataagtactaataaatagttacgtagatagatagata |
66 |
Q |
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| T |
12118679 |
agaccataaatagataataagtactaataaatagttacgcagatagatagata |
12118731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 327
Target Start/End: Original strand, 12107405 - 12107623
Alignment:
| Q |
109 |
atgaaggaatcagggtccttagacttgaaagctctaagaaaggaccacatgttacctacgaagggccatcccatgtcaccaggtggtagagagtactgct |
208 |
Q |
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| T |
12107405 |
atgaaagaatctgggtcattggacttgaatgctcttaggaaagaccacatattaccaacaattggccatcccatgtcacctggtggcaaagagtattgct |
12107504 |
T |
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| Q |
209 |
tcacacctaatttggattcatagagccaccaatttacatttttgagaatggatcttaagactaaaagaccaccaccaatggccataaggaccacccacat |
308 |
Q |
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| T |
12107505 |
tagcaccaagttttgcttcatagagcaaccaattcacactcttgagaagggttcttaggataaaaagaacaccaactatggcaccaaagacaatccataa |
12107604 |
T |
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| Q |
309 |
ggaatccatctctaaaatc |
327 |
Q |
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| T |
12107605 |
ggaacccatctctaaaatc |
12107623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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