View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_5 (Length: 420)
Name: NF10353_low_5
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 46 - 401
Target Start/End: Complemental strand, 7804253 - 7803884
Alignment:
| Q |
46 |
tgaagtaaccaatcttatttaacaaaataaagtttggttgttgctgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaaca |
145 |
Q |
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| T |
7804253 |
tgaagtaaccgatcttatttaacaaaataaagtttggttgttgttgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaaca |
7804154 |
T |
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| Q |
146 |
aaaatcttgatgccat-----gacttccctaacacaacagttatgacttgag----caaaaattaaaacaacggttatgataaagagaattaagttgaag |
236 |
Q |
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| T |
7804153 |
aaaatcttgatgccatgagtagacttccctaacacaacagttatgacttgagaaaaaaaaaattaaaaccacggttatgataaagagaattaagttgaag |
7804054 |
T |
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| Q |
237 |
acaaattttggtgggtgg-----ggcatagctcctaattaatcaataccttaattatatccattaacaattcaaatattatttttagttcatcaaatgat |
331 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804053 |
acaaattttggtgggtggggcatggcatagctcctaattaatcaataccttaattatatccattaacaattcaaatattatttttagttcatcaaatgat |
7803954 |
T |
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| Q |
332 |
tgaaaatgattggcatgtaactaccagtacaatattaatgggacactaattaggtaccttacgttaagac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7803953 |
tgaaaatgattggcatgtaactaccagtacaatattaatgggacactaattaggtaccttacgttaagac |
7803884 |
T |
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