View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10353_low_7 (Length: 383)
Name: NF10353_low_7
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 7875502 - 7875243
Alignment:
| Q |
19 |
cacagaaaacatagaagttaataacattgagaattactctaacacaaacacataaaaattatatcaaatgctaaaataaattgctaaaaccttaagatga |
118 |
Q |
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| T |
7875502 |
cacagaaaacatagaagtcaataacattgagaattactccaacacaaacacataaaaattatagcaaatgctaaaataaattgctaaaaccttaagatga |
7875403 |
T |
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| Q |
119 |
caatatgttcattctattcgcttaacagtgtatttttattatcagagaatgaatattaacaaaagcacaattttttaaaaatttaataattgcacaaaca |
218 |
Q |
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| T |
7875402 |
caatatgttcattctattcgcttaacagtgtatttttattatcagagaatgaatattaacaaaagcacaattttttaaaaatttaataactgcacaaaca |
7875303 |
T |
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| Q |
219 |
gactatattttacacagaaattccatcatatttctctatttaccatggtaaaattcaata |
278 |
Q |
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| T |
7875302 |
gactatattttacacagaaattccatcatatttctctatttaccatggtaaaattcaata |
7875243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 7874547 - 7874456
Alignment:
| Q |
275 |
aataagacacttcataattccatagataataaaaaagatacaaaaatcaaagaattatgcaaaacctttggaaggaaccgtattctcaaaat |
366 |
Q |
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| T |
7874547 |
aataagacacttcataattccatagataataaaaaagatacaaaaatcaaagaattatgcaaaacctttggaaggaaccgtattctcaaaat |
7874456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 7875230 - 7875187
Alignment:
| Q |
235 |
gaaattccatcatatttctctatttaccatggtaaaattcaata |
278 |
Q |
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| T |
7875230 |
gaaattccattatatttatctatctaccatggtaaaattcaata |
7875187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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