View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10353_low_8 (Length: 378)
Name: NF10353_low_8
Description: NF10353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10353_low_8 |
 | |
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| [»] scaffold0070 (4 HSPs) |
| | |
|
| [»] scaffold0955 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 25384135 - 25384452
Alignment:
| Q |
1 |
cagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25384135 |
cagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaatta |
25384234 |
T |
|
| Q |
101 |
gtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaactta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25384235 |
gtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaactta |
25384334 |
T |
|
| Q |
201 |
agatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataa |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25384335 |
agatgaagagaagcgtccgcatgcttcgtttgactcatgagatgctttcatatatgaaagattcagaagcttatgaaaaactattttaggtgcattataa |
25384434 |
T |
|
| Q |
301 |
atgtgcttcttcttttac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25384435 |
atgtgcttcttcttttac |
25384452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 25692484 - 25692800
Alignment:
| Q |
1 |
cagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| | |||||||||| |||| ||||||| |||||||||||| || |
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|
| T |
25692484 |
cagaacagaagctgaacttgttgaggaaattgcaatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaattactaaacta |
25692583 |
T |
|
| Q |
101 |
gtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaactta |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25692584 |
gagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaaataagtcatgaggcaacggttcaatgcataactgaactta |
25692683 |
T |
|
| Q |
201 |
agatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataa |
300 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
25692684 |
agatgaagagaagcatccgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattatag |
25692783 |
T |
|
| Q |
301 |
atgtgcttcttctttta |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25692784 |
atgtgcttcttctttta |
25692800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 131 - 318
Target Start/End: Original strand, 25798562 - 25798749
Alignment:
| Q |
131 |
tataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtctgcatgcttcgtt |
230 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
25798562 |
tataagagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaatgcataaaagaacttaagatgaagagaagcatccgcatgcttcgtt |
25798661 |
T |
|
| Q |
231 |
tgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
318 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
25798662 |
tgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataaatgtggttcttcttttac |
25798749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 125 - 318
Target Start/End: Original strand, 25488163 - 25488360
Alignment:
| Q |
125 |
caatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtc----tgc |
220 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
25488163 |
caatattatcaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcatcgcataacagaacttaagatgaagagaagcgtccgcatgc |
25488262 |
T |
|
| Q |
221 |
atgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
318 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
25488263 |
atgcttcgtttgacacgtgaaatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataaatgtggttcttcttttac |
25488360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 25602698 - 25602836
Alignment:
| Q |
139 |
catagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcg-------tctgcatgcttcgttt |
231 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
25602698 |
catagatacttatgaaaataaagtttgtcatgaggcaacggttgaacgcataacagaacttaagatgaagagaagtgtctgcaatctgcatgcttcgttt |
25602797 |
T |
|
| Q |
232 |
gacttgtgagatactttcatacatgaaagattcagaagc |
270 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
25602798 |
gacacgtgagatgctttcatacatgaaagattcagaagc |
25602836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 25602609 - 25602695
Alignment:
| Q |
15 |
aacttgttgacgaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaattag |
101 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |||| | | |||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
25602609 |
aacttgttgaggaaattgcaatggatgtgctgcaaaatttgaatcgtctttatgttggtgacttggatcaacaaattactaaattag |
25602695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 25384805 - 25384777
Alignment:
| Q |
317 |
accttagttttattagatatttacttatt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25384805 |
accttagttttattagatatttacttatt |
25384777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 19439 - 19122
Alignment:
| Q |
1 |
cagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaatta |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||| |||| ||||||| |||||||||| | || |
|
|
| T |
19439 |
cagaacataagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatcatcaaattactatacta |
19340 |
T |
|
| Q |
101 |
gtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaactta |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
19339 |
gagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaattaagtaagtcatgagtcaacggttccacgcataactgaactta |
19240 |
T |
|
| Q |
201 |
agatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataa |
300 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
19239 |
agatgaagagaagcatccgcatgcttcgtttgacacgtgagatgttttcatacatggaagattcagaagcttataaaaaactattttagttgtgttataa |
19140 |
T |
|
| Q |
301 |
atgtgcttcttcttttac |
318 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
19139 |
atttgcttctttttttac |
19122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 86 - 318
Target Start/End: Complemental strand, 38751 - 38519
Alignment:
| Q |
86 |
caaattactaaattagtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaac |
185 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
38751 |
caaattattaaattagagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaac |
38652 |
T |
|
| Q |
186 |
gcataactgaacttaagatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38651 |
gcataactgaacttaagatgaagagaagcgtccgcatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactatt |
38552 |
T |
|
| Q |
286 |
ttaggtgcattataaatgtgcttcttcttttac |
318 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| |
|
|
| T |
38551 |
ttagttgcattataaatgtggttcttcttttac |
38519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38825 - 38770
Alignment:
| Q |
1 |
cagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctga |
56 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
38825 |
cagaacagaagctgaacttgttgaggaaattgcgatgggtgtgctgcaaaagttga |
38770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 19098 - 19057
Alignment:
| Q |
277 |
aaaactattttaggtgcattataaatgtgcttcttcttttac |
318 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19098 |
aaaactattttagttgcattatagatgtgcttcttcttttac |
19057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 3615 - 3918
Alignment:
| Q |
1 |
cagaacagaagctgaacttgttgacgaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtgatctggatcaccaaattactaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || ||| || | | ||||||| ||||||| |
|
|
| T |
3615 |
cagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgattcaatattaaattagag-----------caaattattaaatta |
3703 |
T |
|
| Q |
101 |
gtgcaacttgcacaacttcagctacaatactataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaactta |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704 |
gagcaacttgcacaacttcagcttcaatattataaaagcatagatacttacgaaaatcaagtaagtcatgaggcaacggttcaacgcataactgaactta |
3803 |
T |
|
| Q |
201 |
agatgaagagaagcgtctgcatgcttcgtttgacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataa |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
3804 |
agatgaagagaagcatccacatgcttcgtttgacacgtgagatgctttcatacatggaagattcagaagcttatgaaaaactattttagttgcattataa |
3903 |
T |
|
| Q |
301 |
atgtgcttcttcttt |
315 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
3904 |
atgtggttcttcttt |
3918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 132 - 318
Target Start/End: Original strand, 20591918 - 20592103
Alignment:
| Q |
132 |
ataaaagcatagatacttatgaaaatcaactaagtcatgaggcaacggttcaacgcataactgaacttaagatgaagagaagcgtctgcatgcttcgttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
20591918 |
ataaaagcatagatacttatgaaaatcaagtaagtcatgacgcaacggttgaacgtataatagaacttaagatgaagagaagcatccgcatgcttcgttt |
20592017 |
T |
|
| Q |
232 |
gacttgtgagatactttcatacatgaaagattcagaagcttatcaaaaactattttaggtgcattataaatgtgcttcttcttttac |
318 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
20592018 |
gacacgtgagatgctttcatacatggaagattcagaagcttat-gaaaactattttagttgcattatagatgtgcttcttcttttac |
20592103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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