View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_high_1 (Length: 401)
Name: NF10354_high_1
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 35681454 - 35681058
Alignment:
| Q |
1 |
caccttaagaaaatgaaggcaaagtatggatccttataaatgtatttattgtgtttgcccattgtgtgtacccttcctacttcttccacatcatgaagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35681454 |
caccttaagaaaatgaaggcaaagtatggatccttataaatgtatttattgtgtttgcccattgtgtgtacccttcctacttcttccacatcatggcgca |
35681355 |
T |
|
| Q |
101 |
accgcaaccaatgagccactgtttctggattgaagcactgacctttctcagcaaaattgtctatcttcacgtcggacgcatctaggggagagtttataat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681354 |
accgcaaccaatgacccactgtttctggattgaagcactgacctttctcagcaaaattgtctatcttcacgtcggacgcatctaggggagagtttataat |
35681255 |
T |
|
| Q |
201 |
atcttgaaagttcaactttgcagcatttagcgcttcattactctcagttgcagtgtcgcagacttttaccacaaccgagcatgtgttgtgaaattttgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35681254 |
atcttgaaagttcaactttgcagcatttagcgcttcattactctcagttgcagtgtcgcagacttttaccgcaaccgagcatgtgttgtgaaattttgcc |
35681155 |
T |
|
| Q |
301 |
aaatcagtttgtgcttttggcttatcacaatctctaatcatttttctgttagccaaaaaccctatgctgccattggtgtcattccttttcttctcac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
35681154 |
aaatcagtttgtgcttttggcttatcacaatctctaatcatttttctgttagccaaaaaccctatgctgccattggtgtcatgccttttcttatcac |
35681058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 61 - 305
Target Start/End: Original strand, 32535070 - 32535314
Alignment:
| Q |
61 |
attgtgtgtacccttcctacttcttccacatcatgaagcaaccgcaaccaatgagccactgtttctggattgaagcactgacctttctcagcaaaattgt |
160 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32535070 |
attgtgtgtacccttcctacttcttccacatcataacacaaccgcagccaatgagctactgtttctggattgaagcactcacctttctcagcaaaattgt |
32535169 |
T |
|
| Q |
161 |
ctatcttcacgtcggacgcatctaggggagagtttataatatcttgaaagttcaactttgcagcatttagcgcttcattactctcagttgcagtgtcgca |
260 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||| | |
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| T |
32535170 |
ctatcttcacgtcggacgcatctaggggagagttgataatatccggaaagttcaactctgcagcatttagtgcttcattactctcagttgcaatgtcata |
32535269 |
T |
|
| Q |
261 |
gacttttaccacaaccgagcatgtgttgtgaaattttgccaaatc |
305 |
Q |
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| T |
32535270 |
gacttttaccgcagcggagcatgtgtcgcgaagttttgccaaatc |
32535314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37192179 - 37192119
Alignment:
| Q |
1 |
caccttaagaaaatgaaggcaaagtatggatccttataaatgtatttattgtgtttgccca |
61 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||| |||| |
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| T |
37192179 |
caccttaagaaaatgaaggcataggatggatccttagaaatgtattcattgtgtttcccca |
37192119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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