View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10354_high_10 (Length: 239)

Name: NF10354_high_10
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10354_high_10
NF10354_high_10
[»] chr3 (8 HSPs)
chr3 (1-223)||(11495170-11495392)
chr3 (20-221)||(10080010-10080211)
chr3 (20-221)||(10186980-10187181)
chr3 (19-223)||(2921850-2922057)
chr3 (4-222)||(5968125-5968343)
chr3 (20-223)||(11488928-11489131)
chr3 (37-221)||(3872475-3872648)
chr3 (66-154)||(4132628-4132716)
[»] chr5 (1 HSPs)
chr5 (38-205)||(16449129-16449296)
[»] chr4 (1 HSPs)
chr4 (35-199)||(5990864-5991028)
[»] scaffold0603 (1 HSPs)
scaffold0603 (20-202)||(2434-2616)
[»] chr8 (1 HSPs)
chr8 (28-171)||(18390385-18390528)
[»] chr1 (2 HSPs)
chr1 (38-223)||(17314110-17314286)
chr1 (66-111)||(13936120-13936165)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11495392 - 11495170
Alignment:
Q  1 ttcgttcgctacctgaaagaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495392 ttcgttcgctacctgaaagaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcc 11495293  T
Q  101 tatcagtttacagaaattgagtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaatt 200  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495292 tatcagtttacagaaattgactgttggctatgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaatt 11495193  T
Q  201 aatggcaatgatatggtgaacac 223  Q
    |||||||||||||||||||||||    
T  11495192 aatggcaatgatatggtgaacac 11495170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 10080010 - 10080211
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||| || |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||    
T  10080010 aatgaccgatcttactggccttaaagaaatggaaattgataatctaccaaatgttcaatcttttgtcatagatgatttgcctagcagtttacaggaactg 10080109  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtga 219  Q
    | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||    
T  10080110 actgttggctctgttggagggattatgtggaaaactgagccaacttgggaacatctcacttgtctttcagtgttgcgaataagcggtaatgatatggtga 10080209  T
Q  220 ac 221  Q
    ||    
T  10080210 ac 10080211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 10186980 - 10187181
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||| || |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||    
T  10186980 aatgaccgatcttactggccttaaagaaatggaaattgataatctaccaaatgttcaatcttttgtcatagatgatttgcctagcagtttacaggaactg 10187079  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtga 219  Q
    | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||    
T  10187080 actgttggctctgttggagggattatgtggaaaactgagccaacttgggaacatctcacttgtctttcagtgttgcgaataagcggtaatgatatggtga 10187179  T
Q  220 ac 221  Q
    ||    
T  10187180 ac 10187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 2921850 - 2922057
Alignment:
Q  19 gaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaatt 118  Q
    |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| || |    
T  2921850 gaatgaacactctaactggccttcaagaaatggaaattgataatctaccaaatcttaaatattttgtcatagatgatttgcctatcagtttacaggaact 2921949  T
Q  119 gagtgttggctctgttggagggattatgtgga---atactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatg 215  Q
    || |||||||||||||||||||||||||||||   ||||| ||| ||||||| |||||||||||||||||||||||||| |||| || ||| |||||| |    
T  2921950 gactgttggctctgttggagggattatgtggaagtatactaagccaacttggaaacatctcacttgtctttcagtgttgagaataaacggcgatgatacg 2922049  T
Q  216 gtgaacac 223  Q
    ||||||||    
T  2922050 gtgaacac 2922057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 5968125 - 5968343
Alignment:
Q  4 gttcgctacctgaaagaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctat 103  Q
    |||| |||||||||  ||||| | |||| |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  5968125 gttcactacctgaagcaatgagctctctaactggccttcaagaaatggaaattgataatcttccgaatcttcaatcttttgtcatagatgatttgcctat 5968224  T
Q  104 cagtttacagaaattgagtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaat 203  Q
    |||||||||| || ||| |||||| ||||||||||||||||| ||||| | ||||| |||||||||||||||| | | |||||||||||||||||| ||     
T  5968225 cagtttacaggaactgactgttggttctgttggagggattatttggaagaatgagccaacttgggaacatctcccctatctttcagtgttgcgaatcaac 5968324  T
Q  204 ggcaatgatatggtgaaca 222  Q
     | ||||||| ||||||||    
T  5968325 agtaatgatacggtgaaca 5968343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11489131 - 11488928
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||||| || | |||| |||||  ||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||||| | | || ||    
T  11489131 aatgaacactttaactgaccttcaggaaatggaaattgatgatctgccgaatcttcaatcttttgtcatagatgatttgcctatgagtttgcgggaactg 11489032  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtga 219  Q
    | ||||||||| || |  || ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  11489031 actgttggctcggtagagggtattttgtggaatactgagccaacttgggaacatctcacttgtctttctgtgttgcgaattaatggcaatgctatggtga 11488932  T
Q  220 acac 223  Q
    ||||    
T  11488931 acac 11488928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 3872475 - 3872648
Alignment:
Q  37 gccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttgg 136  Q
    |||||| ||||||||||||| ||||||||||||||||||            |||||||||| |||| |||||||||  |  ||| |||||||||||||||    
T  3872475 gccttcaagaaatggaaattaataatctaccaaatcttcg-----------tagatgatttgcctagcagtttacatgagctgactgttggctctgttgg 3872563  T
Q  137 agggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtgaac 221  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||| |||||| || ||||||| |||||||    
T  3872564 agggattatgtggaatactgagcaaaattgggaacaactcacttgtctttttgtgttgcaaattaacggtaatgatacggtgaac 3872648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 4132628 - 4132716
Alignment:
Q  66 ccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttggagggattatgtggaatac 154  Q
    |||||||| ||||| |||  |||| |||||||||||||||| |||| | || |||||||||||  |||||||||| || ||||||||||    
T  4132628 ccaaatctgcaatcgttttccatacatgattttcctatcagcttacgggaactgagtgttggcaatgttggaggggttttgtggaatac 4132716  T

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Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 16449129 - 16449296
Alignment:
Q  38 ccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttgga 137  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||| || | | ||||||||||||||||    
T  16449129 ccttcaagaaatggaaattgataatctaccaaatcttcaatctttaatcatagatgatttgcctgtcagtttacaggaacttactgttggctctgttgga 16449228  T
Q  138 gggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatgg 205  Q
    | ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  16449229 gtgattatgtggaatacggagccaacttgggaacatctgacttgtctttcagtgttgcgaattaatgg 16449296  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 5990864 - 5991028
Alignment:
Q  35 tggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgtt 134  Q
    |||||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||| || | ||||||||   || | | ||| |||||||||    
T  5990864 tggccttcaagaacttgaaattgataatctaccaaatcttcaatcttttgccatagatgatttaccaagcagtttacgtgaacttactgtcggctctgtt 5990963  T
Q  135 ggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaat 199  Q
    |||||||||||||||||||| ||   ||||||||| |||||||||||||||||||||||||||||    
T  5990964 ggagggattatgtggaataccgacacaacttgggagcatctcacttgtctttcagtgttgcgaat 5991028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 2616 - 2434
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||||| |||| ||||| ||||  |||||||||||||||| |||||||||||||||||  ||||  ||||||||||| ||| ||||||||| | |||||    
T  2616 aatgaacactctaactggtcttcatgaaatggaaattgatagtctaccaaatcttcaatactttgatatagatgatttgcctttcagtttacgggaattg 2517  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaa 202  Q
    | |||||||||| |||||  |||| ||||||||||| ||| ||||||||||| ||||| |||||| |||||| ||||||||||    
T  2516 actgttggctctcttggatcgattttgtggaatactaagccaacttgggaacgtctcaattgtctgtcagtgctgcgaattaa 2434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 18390385 - 18390528
Alignment:
Q  28 ctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttgg 127  Q
    |||| |||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||  ||||| | | || ||| | ||||    
T  18390385 ctctaactggccttcaagtaatggaaattgataatcttccaaatcttcaatcttttgtcataaatgatttgcctactagtttgcgggaactgactattgg 18390484  T
Q  128 ctctgttggagggattatgtggaatactgagcaaacttgggaac 171  Q
    ||||||||||||| || ||||||||||||| | |||||||||||    
T  18390485 ctctgttggagggtttttgtggaatactgatccaacttgggaac 18390528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 17314110 - 17314286
Alignment:
Q  38 ccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttgga 137  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||   | || ||| |||||||  |||||||    
T  17314110 ccttcaagaaatggaaattgatgatctaccaaatcttcaatcatttgtcatagatgatttgcctttcagtttgtgggaactgactgttggccatgttgga 17314209  T
Q  138 gggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtgaacac 223  Q
    |  ||| ||  ||||         ||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||    
T  17314210 gctattttgcagaat---------acttgggaacatctcacctgtctttcagtgttgcgaattaatggaaataatacggtgaacac 17314286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 13936120 - 13936165
Alignment:
Q  66 ccaaatcttcaatcttttgtcatagatgattttcctatcagtttac 111  Q
    |||||||| |||| ||||| |||||||||||| |||||||||||||    
T  13936120 ccaaatctgcaatattttgccatagatgatttgcctatcagtttac 13936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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