View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10354_high_3 (Length: 366)
Name: NF10354_high_3
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 41 - 358
Target Start/End: Original strand, 1464236 - 1464553
Alignment:
| Q |
41 |
ccttttatctaattgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1464236 |
ccttttatctaattgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgc |
1464335 |
T |
|
| Q |
141 |
aaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1464336 |
aaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacg |
1464435 |
T |
|
| Q |
241 |
tgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagtaatgaattatgcggcataaacacttaca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1464436 |
tgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagtaatgaattatgcggcataaacactgacg |
1464535 |
T |
|
| Q |
341 |
agtgaaagtgtgtctgtg |
358 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1464536 |
agtgaaagtgtgtctgtg |
1464553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 319
Target Start/End: Original strand, 1491676 - 1491905
Alignment:
| Q |
92 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
191 |
Q |
| |
|
|||||||||||||||| | || | || ||||||||||||| | || | ||| |||||| ||||||||||| ||| |||||| ||| | ||||||| |
|
|
| T |
1491676 |
aagaaagactatggtaaataacagagagaagcacaatgggaaacaacacaaggatcacttcatggtcttcaaccttttacctcaaaccttttcaatgaaa |
1491775 |
T |
|
| Q |
192 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatgg-ttgaaaaagatttcagaa |
290 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | ||||| ||| ||| || ||||| || ||||||||| |||| |
|
|
| T |
1491776 |
atagtagctatagggagctttcagagattgcagagcaagacaagaaacatgctgaagttgcaagttaatccatttaaatggtttaaaaaagattaaagaa |
1491875 |
T |
|
| Q |
291 |
gtggaaattat-tgttgaagagtaatgaat |
319 |
Q |
| |
|
||||||| ||| | |||||||||||||||| |
|
|
| T |
1491876 |
gtggaaagtatgtattgaagagtaatgaat |
1491905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 280
Target Start/End: Complemental strand, 1490576 - 1490388
Alignment:
| Q |
92 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
191 |
Q |
| |
|
|||||||||||||||| |||| | || |||||||||||| | |||| || |||||| |||||| |||||||| |||||| ||| | | ||||| |
|
|
| T |
1490576 |
aagaaagactatggtaaagaagagagagaagcacaatggaaagcagcacagggatcacttcatggtgttcagccttttacctcgaaccttttgaatgaaa |
1490477 |
T |
|
| Q |
192 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaa |
280 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||| | || | | ||||||||||||| |||||||||| ||||| |
|
|
| T |
1490476 |
atagtagctaaagggagctttcagagattgtagagcaagacaagaaacacgttgtagttgcaaggtaagccatttgaatggtttaaaaa |
1490388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 1495455 - 1495269
Alignment:
| Q |
73 |
acagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcc---t |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||| | ||||||||||||||||| | ||||| ||| ||| || |||||||||||||| |
|
|
| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
1495356 |
T |
|
| Q |
170 |
acctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaagg |
256 |
Q |
| |
|
|||||||| | ||||||| | | ||||||| || ||||| |||||||| ||||||||||||| |||||||||| | |||||| |
|
|
| T |
1495355 |
gcctccaacgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgcaagg |
1495269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 60 - 351
Target Start/End: Original strand, 26791967 - 26792250
Alignment:
| Q |
60 |
atattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtct |
159 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
26791967 |
atattttctcattacagactgccttcacttcaaagaaagactatggtagagaacagagggaagcacaatgggcatcaacacaaagatcaattcatggtct |
26792066 |
T |
|
| Q |
160 |
tcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaa |
259 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||| ||||||||||| ||||||||||||| |||||||| | ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
26792067 |
tcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaa |
26792166 |
T |
|
| Q |
260 |
gccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagtaatgaattatgcggcataaacacttacaagtgaaagtgt |
351 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
26792167 |
gccacttgaatggttgaaaaa--------aagtggaaattattattgaagagtaatgaattatgtatcacaaacacttatgagtgaaagtgt |
26792250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 50277990 - 50278023
Alignment:
| Q |
72 |
tacagactgccttcacatcaaagaaagactatgg |
105 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
50277990 |
tacagactgccttcacaacaaagaaagactatgg |
50278023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University