View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_high_4 (Length: 358)
Name: NF10354_high_4
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 3447101 - 3446770
Alignment:
| Q |
11 |
cataggcagcaaatacagcaccattcacaacaaatgctctggcaaccgcagttcctaaaccgcgccacagcacagggtatccttcttctctaacgctttt |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3447101 |
cataagcagcaaatacagcaccattcacaacaaatgctctggcaaccgcagttcctaaaccacgccacagcacagggtatccttcttctctaacgctttt |
3447002 |
T |
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| Q |
111 |
cgtgatgcaatcataaacgcctttgtattttatagcagaaggcgtttgagcttgtagtctcgtcttcacaacatcaaaagggtaactgcagacccagctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447001 |
cgtgatgcaatcataaacgcctttgtattttatagcagaaggcgtttgagcttgtagtctcgtcttcacaacatcaaaagggtaactgcagacccagctc |
3446902 |
T |
|
| Q |
211 |
gctacccctgctaatcctccagacaccaacatagtattcaaactttcttgaccactttttctacaacctggatgcaatttttccctcatgtattcatatg |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3446901 |
gctacccccgctaatcctccagacaccaacatagtattcaaactttcttgaccactttttctacaacctggatgcaatttttccctcatgtattcatatg |
3446802 |
T |
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| Q |
311 |
tccagaagtaaaaaccatgagaaggtatatcc |
342 |
Q |
| |
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||||||||||||||||||||||||| |||||| |
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| T |
3446801 |
tccagaagtaaaaaccatgagaaggaatatcc |
3446770 |
T |
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