View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_high_5 (Length: 345)
Name: NF10354_high_5
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 45006126 - 45005788
Alignment:
| Q |
1 |
taatgaaaacccaaattatgatattactagttgattgcaacttttgtcatatacgtcggacttagactttaaaatggctgnnnnnnnaaccatatga--- |
97 |
Q |
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| T |
45006126 |
taatgcaaacccaaattatgatattactagttgattgcaacttttgtcatatacgtcggacttagactttaaaatggctgtttttt-aaccatatgagta |
45006028 |
T |
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| Q |
98 |
---ctttgaagtcaccgataaaaagccaattaacggaaattccattgatatatttcttagtcacaaattaatatatcttcacattgaatatgttaatatg |
194 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45006027 |
tgactttgaagtcgccgataaaaagccaattaacggaaattccattgatatatttcttagtcacaaattaatatatcttcacattgaatatgttaatatg |
45005928 |
T |
|
| Q |
195 |
acatttaagctattatgctcaactttttctaagagacatgcaaagctaaagtttgctcaacacattttcagacactaaatatggatctataaattcaaac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45005927 |
acatttaagctattatgctcaactttttctaagagacatgcaaagctaaagtttgctcaacacattttcaaacactaaatatggatctataaattcaaac |
45005828 |
T |
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| Q |
295 |
tttaatttgtcacgtcttaaaaactaggtatcctttgcta |
334 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
45005827 |
tttaatttgccacgtcttaaaaactaggtatcctttgcta |
45005788 |
T |
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