View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_low_10 (Length: 275)
Name: NF10354_low_10
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 39294304 - 39294061
Alignment:
| Q |
16 |
cataggtacttcagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcagcactgtgcttctcaaccaaatcagca |
115 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
39294304 |
cataggtacgttagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcggcattgtgcttctcaaccaaatcagca |
39294205 |
T |
|
| Q |
116 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaaggaaacgcttacataagcactcatttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
39294204 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacacgctgaaggaaatgcttacataagcactcatttt |
39294105 |
T |
|
| Q |
216 |
aggtcaaggtccattatgaaaggcctcacgagctgctgaaactg |
259 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
39294104 |
aggtcaaggtccattatgaaaggcctcgcaagctgctgaaactg |
39294061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 8357422 - 8357665
Alignment:
| Q |
16 |
cataggtacttcagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcagcactgtgcttctcaaccaaatcagca |
115 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
8357422 |
cataggtacataagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctaagcattgtgcttctcaaccaaatcagca |
8357521 |
T |
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| Q |
116 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaaggaaacgcttacataagcactcatttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
8357522 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactaatataagttcatgtaagaaaggacactctgaaggaaatgcttacataagcattcatttt |
8357621 |
T |
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| Q |
216 |
aggtcaaggtccattatgaaaggcctcacgagctgctgaaactg |
259 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8357622 |
aggccaaggtccattatgaaaggcctcacgagctgctgaaactg |
8357665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 44000086 - 44000220
Alignment:
| Q |
125 |
aataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaaggaaacgcttacataagcactcattttaggtcaagg |
224 |
Q |
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||||||| ||||||||||||| || |||||| ||| ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |
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| T |
44000086 |
aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg |
44000185 |
T |
|
| Q |
225 |
tccattatgaaaggcctcacgagctgctgaaactg |
259 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
44000186 |
tccattatcaaaggcctcacgagctgctgaaactg |
44000220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 43999946 - 44000058
Alignment:
| Q |
16 |
cataggtacttcagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcagcactgtgcttctcaaccaaatcagca |
115 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
43999946 |
cataggtacttcagctttggcagcctgttcataaagctttccattgttccatgcctccagagctgcaatctcatcattgtgcttctcaaccaaatcagca |
44000045 |
T |
|
| Q |
116 |
aaacgcagcaata |
128 |
Q |
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|| |||| ||||| |
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| T |
44000046 |
aatcgcaacaata |
44000058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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