View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_low_12 (Length: 248)
Name: NF10354_low_12
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14369083 - 14368852
Alignment:
| Q |
1 |
cacaaagtttccacacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14369083 |
cacaaagtttccacacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaa |
14368984 |
T |
|
| Q |
101 |
gaacaaatggaatgaggattcttcatgtttgtaacataaattaaatcactttgtaaaagaacaacagtatacaaatgagatactagtttattgtgattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14368983 |
gaacaaatggaatgaggattcttcatgtttgtaacataaattaaatcactttgtaaaagaacaacagtatacaaatgagatactagtttattgtgattta |
14368884 |
T |
|
| Q |
201 |
tgacttttcatatttgaatgtagtttattatg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14368883 |
tgacttttcatatttgaatgtagtttattatg |
14368852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 14412275 - 14412325
Alignment:
| Q |
181 |
tactagtttattgtgatttatgacttttcatatttgaatgtagtttattat |
231 |
Q |
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||||| |||| ||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
14412275 |
tactaatttactgtgatttatggcttttcatatttgaatgtaatttcttat |
14412325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 21818095 - 21818237
Alignment:
| Q |
1 |
cacaaagtttccacacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaa |
100 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21818095 |
cacaaaatttccgcacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagatcagattctgatggagtattcacagttgaa |
21818194 |
T |
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| Q |
101 |
gaacaaatggaatgaggattcttcatgtttgtaacataaatta |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21818195 |
gaacaaatggaatgaggattcttcatgtttgtaacataaatta |
21818237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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