View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_low_13 (Length: 242)
Name: NF10354_low_13
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 35479080 - 35478849
Alignment:
| Q |
1 |
tgtctcgtcacctataaagataaaatgagagtgctacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggc |
100 |
Q |
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| T |
35479080 |
tgtctcgtcacctataaagataaaatgagagtgctacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggc |
35478981 |
T |
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| Q |
101 |
acgaaatgatgcaaagactttccacccctttggaatagtgtagcctgtattacaagtcaaaaattaaaattcaaaataaatgttttgattttaaattatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35478980 |
acgaaatgatgcaaagactttccacccctttggaatagtgtagcctgtattacaagtcaaaaattaaaattcaaaataaatgttttgattttaaattatg |
35478881 |
T |
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| Q |
201 |
tttttgtcatgataatacatactatacctttg |
232 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
35478880 |
tttttgtcatgataatgtatactatacctttg |
35478849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 31557257 - 31557178
Alignment:
| Q |
35 |
tacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaa |
114 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| || || || | ||| || |||||||||||||||| |
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| T |
31557257 |
tacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaa |
31557178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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