View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_low_14 (Length: 240)
Name: NF10354_low_14
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35681542 - 35681763
Alignment:
| Q |
1 |
ccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtact |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681542 |
ccactcatgatcaatattatgcatattttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtact |
35681641 |
T |
|
| Q |
101 |
ctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681642 |
ctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttact |
35681741 |
T |
|
| Q |
201 |
gtgttggtttcattcattctta |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
35681742 |
gtgttggtttcattcattctta |
35681763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31635431 - 31635649
Alignment:
| Q |
1 |
ccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtact |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| || ||||||||| |
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| T |
31635431 |
ccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaaccaagaaacattataccaagggtact |
31635530 |
T |
|
| Q |
101 |
ctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttact |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| || | |
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| T |
31635531 |
ctcaccatttggtgtt---ctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcta-t |
31635626 |
T |
|
| Q |
201 |
gtgttggtttcattcattcttat |
223 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
31635627 |
gtgttggtttcatttattcttat |
31635649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4302744 - 4302963
Alignment:
| Q |
1 |
ccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtact |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
4302744 |
ccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaaccaagaaacattatactaagggtact |
4302843 |
T |
|
| Q |
101 |
ctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttact |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |
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| T |
4302844 |
ctcaccatttggtgtt---ctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaact |
4302940 |
T |
|
| Q |
201 |
gtgttggtttcattcattcttat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
4302941 |
gtgttggtttcattcattcttat |
4302963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 37192640 - 37192857
Alignment:
| Q |
3 |
actcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttag----actaagggta |
98 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
37192640 |
actcttgatcaatattatgcatatcttatgaatgcatttttaagctttattaaaggcttatatgaagtgggaccaagaaacgttagactaactaagggta |
37192739 |
T |
|
| Q |
99 |
ctctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgttta |
198 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| | ||| |
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| T |
37192740 |
ctctcaccatttgatgtt---ctgcatgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccactta |
37192836 |
T |
|
| Q |
199 |
ctgtgttggtttcattcattc |
219 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
37192837 |
ctgtgttggtttcattcattc |
37192857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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