View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10354_low_15 (Length: 239)

Name: NF10354_low_15
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10354_low_15
NF10354_low_15
[»] chr3 (8 HSPs)
chr3 (1-223)||(11495170-11495392)
chr3 (20-221)||(10080010-10080211)
chr3 (20-221)||(10186980-10187181)
chr3 (19-223)||(2921850-2922057)
chr3 (4-222)||(5968125-5968343)
chr3 (20-223)||(11488928-11489131)
chr3 (37-221)||(3872475-3872648)
chr3 (66-154)||(4132628-4132716)
[»] chr5 (1 HSPs)
chr5 (38-205)||(16449129-16449296)
[»] chr4 (1 HSPs)
chr4 (35-199)||(5990864-5991028)
[»] scaffold0603 (1 HSPs)
scaffold0603 (20-202)||(2434-2616)
[»] chr8 (1 HSPs)
chr8 (28-171)||(18390385-18390528)
[»] chr1 (2 HSPs)
chr1 (38-223)||(17314110-17314286)
chr1 (66-111)||(13936120-13936165)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11495392 - 11495170
Alignment:
Q  1 ttcgttcgctacctgaaagaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495392 ttcgttcgctacctgaaagaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcc 11495293  T
Q  101 tatcagtttacagaaattgagtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaatt 200  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495292 tatcagtttacagaaattgactgttggctatgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaatt 11495193  T
Q  201 aatggcaatgatatggtgaacac 223  Q
    |||||||||||||||||||||||    
T  11495192 aatggcaatgatatggtgaacac 11495170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 10080010 - 10080211
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||| || |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||    
T  10080010 aatgaccgatcttactggccttaaagaaatggaaattgataatctaccaaatgttcaatcttttgtcatagatgatttgcctagcagtttacaggaactg 10080109  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtga 219  Q
    | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||    
T  10080110 actgttggctctgttggagggattatgtggaaaactgagccaacttgggaacatctcacttgtctttcagtgttgcgaataagcggtaatgatatggtga 10080209  T
Q  220 ac 221  Q
    ||    
T  10080210 ac 10080211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 10186980 - 10187181
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||| || |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||    
T  10186980 aatgaccgatcttactggccttaaagaaatggaaattgataatctaccaaatgttcaatcttttgtcatagatgatttgcctagcagtttacaggaactg 10187079  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtga 219  Q
    | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||    
T  10187080 actgttggctctgttggagggattatgtggaaaactgagccaacttgggaacatctcacttgtctttcagtgttgcgaataagcggtaatgatatggtga 10187179  T
Q  220 ac 221  Q
    ||    
T  10187180 ac 10187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 2921850 - 2922057
Alignment:
Q  19 gaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaatt 118  Q
    |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| || |    
T  2921850 gaatgaacactctaactggccttcaagaaatggaaattgataatctaccaaatcttaaatattttgtcatagatgatttgcctatcagtttacaggaact 2921949  T
Q  119 gagtgttggctctgttggagggattatgtgga---atactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatg 215  Q
    || |||||||||||||||||||||||||||||   ||||| ||| ||||||| |||||||||||||||||||||||||| |||| || ||| |||||| |    
T  2921950 gactgttggctctgttggagggattatgtggaagtatactaagccaacttggaaacatctcacttgtctttcagtgttgagaataaacggcgatgatacg 2922049  T
Q  216 gtgaacac 223  Q
    ||||||||    
T  2922050 gtgaacac 2922057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 5968125 - 5968343
Alignment:
Q  4 gttcgctacctgaaagaatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctat 103  Q
    |||| |||||||||  ||||| | |||| |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  5968125 gttcactacctgaagcaatgagctctctaactggccttcaagaaatggaaattgataatcttccgaatcttcaatcttttgtcatagatgatttgcctat 5968224  T
Q  104 cagtttacagaaattgagtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaat 203  Q
    |||||||||| || ||| |||||| ||||||||||||||||| ||||| | ||||| |||||||||||||||| | | |||||||||||||||||| ||     
T  5968225 cagtttacaggaactgactgttggttctgttggagggattatttggaagaatgagccaacttgggaacatctcccctatctttcagtgttgcgaatcaac 5968324  T
Q  204 ggcaatgatatggtgaaca 222  Q
     | ||||||| ||||||||    
T  5968325 agtaatgatacggtgaaca 5968343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11489131 - 11488928
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||||| || | |||| |||||  ||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||||| | | || ||    
T  11489131 aatgaacactttaactgaccttcaggaaatggaaattgatgatctgccgaatcttcaatcttttgtcatagatgatttgcctatgagtttgcgggaactg 11489032  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtga 219  Q
    | ||||||||| || |  || ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  11489031 actgttggctcggtagagggtattttgtggaatactgagccaacttgggaacatctcacttgtctttctgtgttgcgaattaatggcaatgctatggtga 11488932  T
Q  220 acac 223  Q
    ||||    
T  11488931 acac 11488928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 3872475 - 3872648
Alignment:
Q  37 gccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttgg 136  Q
    |||||| ||||||||||||| ||||||||||||||||||            |||||||||| |||| |||||||||  |  ||| |||||||||||||||    
T  3872475 gccttcaagaaatggaaattaataatctaccaaatcttcg-----------tagatgatttgcctagcagtttacatgagctgactgttggctctgttgg 3872563  T
Q  137 agggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtgaac 221  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||| |||||| || ||||||| |||||||    
T  3872564 agggattatgtggaatactgagcaaaattgggaacaactcacttgtctttttgtgttgcaaattaacggtaatgatacggtgaac 3872648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 4132628 - 4132716
Alignment:
Q  66 ccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttggagggattatgtggaatac 154  Q
    |||||||| ||||| |||  |||| |||||||||||||||| |||| | || |||||||||||  |||||||||| || ||||||||||    
T  4132628 ccaaatctgcaatcgttttccatacatgattttcctatcagcttacgggaactgagtgttggcaatgttggaggggttttgtggaatac 4132716  T

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Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 16449129 - 16449296
Alignment:
Q  38 ccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttgga 137  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||| || | | ||||||||||||||||    
T  16449129 ccttcaagaaatggaaattgataatctaccaaatcttcaatctttaatcatagatgatttgcctgtcagtttacaggaacttactgttggctctgttgga 16449228  T
Q  138 gggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatgg 205  Q
    | ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  16449229 gtgattatgtggaatacggagccaacttgggaacatctgacttgtctttcagtgttgcgaattaatgg 16449296  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 5990864 - 5991028
Alignment:
Q  35 tggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgtt 134  Q
    |||||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||| || | ||||||||   || | | ||| |||||||||    
T  5990864 tggccttcaagaacttgaaattgataatctaccaaatcttcaatcttttgccatagatgatttaccaagcagtttacgtgaacttactgtcggctctgtt 5990963  T
Q  135 ggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaat 199  Q
    |||||||||||||||||||| ||   ||||||||| |||||||||||||||||||||||||||||    
T  5990964 ggagggattatgtggaataccgacacaacttgggagcatctcacttgtctttcagtgttgcgaat 5991028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 2616 - 2434
Alignment:
Q  20 aatgaacgctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattg 119  Q
    ||||||| |||| ||||| ||||  |||||||||||||||| |||||||||||||||||  ||||  ||||||||||| ||| ||||||||| | |||||    
T  2616 aatgaacactctaactggtcttcatgaaatggaaattgatagtctaccaaatcttcaatactttgatatagatgatttgcctttcagtttacgggaattg 2517  T
Q  120 agtgttggctctgttggagggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaa 202  Q
    | |||||||||| |||||  |||| ||||||||||| ||| ||||||||||| ||||| |||||| |||||| ||||||||||    
T  2516 actgttggctctcttggatcgattttgtggaatactaagccaacttgggaacgtctcaattgtctgtcagtgctgcgaattaa 2434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 18390385 - 18390528
Alignment:
Q  28 ctcttactggccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttgg 127  Q
    |||| |||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||  ||||| | | || ||| | ||||    
T  18390385 ctctaactggccttcaagtaatggaaattgataatcttccaaatcttcaatcttttgtcataaatgatttgcctactagtttgcgggaactgactattgg 18390484  T
Q  128 ctctgttggagggattatgtggaatactgagcaaacttgggaac 171  Q
    ||||||||||||| || ||||||||||||| | |||||||||||    
T  18390485 ctctgttggagggtttttgtggaatactgatccaacttgggaac 18390528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 17314110 - 17314286
Alignment:
Q  38 ccttctagaaatggaaattgataatctaccaaatcttcaatcttttgtcatagatgattttcctatcagtttacagaaattgagtgttggctctgttgga 137  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||   | || ||| |||||||  |||||||    
T  17314110 ccttcaagaaatggaaattgatgatctaccaaatcttcaatcatttgtcatagatgatttgcctttcagtttgtgggaactgactgttggccatgttgga 17314209  T
Q  138 gggattatgtggaatactgagcaaacttgggaacatctcacttgtctttcagtgttgcgaattaatggcaatgatatggtgaacac 223  Q
    |  ||| ||  ||||         ||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||    
T  17314210 gctattttgcagaat---------acttgggaacatctcacctgtctttcagtgttgcgaattaatggaaataatacggtgaacac 17314286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 13936120 - 13936165
Alignment:
Q  66 ccaaatcttcaatcttttgtcatagatgattttcctatcagtttac 111  Q
    |||||||| |||| ||||| |||||||||||| |||||||||||||    
T  13936120 ccaaatctgcaatattttgccatagatgatttgcctatcagtttac 13936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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