View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10354_low_18 (Length: 232)
Name: NF10354_low_18
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 5110923 - 5111121
Alignment:
| Q |
15 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5110923 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttc |
5111022 |
T |
|
| Q |
115 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5111023 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcct |
5111121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 5084148 - 5083954
Alignment:
| Q |
15 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
5084148 |
cacagatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttc |
5084049 |
T |
|
| Q |
115 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5084048 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttc |
5083954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5093924 - 5094118
Alignment:
| Q |
19 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5093924 |
gatgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtctt |
5094023 |
T |
|
| Q |
119 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
5094024 |
catgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcct |
5094118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 14427926 - 14427732
Alignment:
| Q |
19 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
14427926 |
gatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctctt |
14427827 |
T |
|
| Q |
119 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
14427826 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcct |
14427732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 16872369 - 16872553
Alignment:
| Q |
18 |
agatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaat---tggtcaatttcatcttctacttcttctttg |
114 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||| | |
|
|
| T |
16872369 |
agatgaattttcacttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctacttctt---tc |
16872465 |
T |
|
| Q |
115 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
202 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
|
|
| T |
16872466 |
tcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University