View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10354_low_2 (Length: 372)

Name: NF10354_low_2
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10354_low_2
NF10354_low_2
[»] chr3 (11 HSPs)
chr3 (1-360)||(11495596-11495955)
chr3 (1-247)||(7489172-7489418)
chr3 (1-205)||(2921424-2921628)
chr3 (1-205)||(5967715-5967919)
chr3 (1-220)||(10079568-10079787)
chr3 (1-162)||(10186596-10186757)
chr3 (1-159)||(3872075-3872233)
chr3 (1-146)||(11489354-11489499)
chr3 (1-205)||(4058211-4058415)
chr3 (62-210)||(4077882-4078030)
chr3 (3-168)||(4105295-4105460)
[»] chr1 (2 HSPs)
chr1 (1-360)||(17313513-17313869)
chr1 (1-223)||(13935629-13935851)
[»] chr8 (1 HSPs)
chr8 (1-229)||(18389929-18390157)
[»] chr4 (2 HSPs)
chr4 (1-159)||(5990468-5990626)
chr4 (308-337)||(5990323-5990352)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-205)||(2839-3043)
[»] chr5 (1 HSPs)
chr5 (1-201)||(16448682-16448888)
[»] chr2 (1 HSPs)
chr2 (47-137)||(42506504-42506594)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 11495596 - 11495955
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11495596 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcacgaggaaggaattccaaat 11495695  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11495696 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactgtcgaag 11495795  T
Q  201 agaatagagagggagcatcaattggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  11495796 agaatagagagggagcatcaattggctgataacatgtgagaatggaattatcattatgaaattgctattatcatctaaatgtcttgattccaccgaaaaa 11495895  T
Q  301 ggatatcctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcctctc 360  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  11495896 ggatatcctcttaactcaagttcagttaaggaaggaagattgtcaggtatgtctcctctc 11495955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 7489172 - 7489418
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||| |||||||| |||||||||||||| | |||||||||| ||||||||| | | ||||||||| |||| ||||| || ||| |||||||||||||||    
T  7489172 cccaatgtaaatgatatcattgaattacaacaataagatattatcaattccttgtgtaatgtgtaattgtgcaagtaatcgtgatgaaggaattccaaat 7489271  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    ||| | ||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||| | |||||||| |||| ||||||    
T  7489272 tctgaaaattactaattgtgagaaatttcaagatttttggtagacagtctgttgagaaagacgttagagatggaaagccgtctatggtcaactgtcgaag 7489371  T
Q  201 agaatagagagggagcatcaattggctgataacatgtgagaatggaa 247  Q
    ||||| |||||||| |||||||||| |||  |||| ||| |||||||    
T  7489372 agaattgagagggaacatcaattggttgaatacatctgacaatggaa 7489418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2921628 - 2921424
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||| |||| |||| ||||| ||||||||| || | ||    
T  2921628 cccaaggtaaatgatatcattgaattacagctataagatattttcaattcctcgagcgatgtgtaattgtgcaagtcttcatcaggaaggaactctagat 2921529  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    ||||||||||||| ||| |||||||||||||||||||  ||||||| |||||||||| |||||| ||| |||| ||| | |||||||| |||| ||||||    
T  2921528 tctcacaattacttattatgagaaatttcaaggttttccgtagaccatctgttgggagagacgtcagagatgggaagccttctatggtcaactgtcgaag 2921429  T
Q  201 agaat 205  Q
    |||||    
T  2921428 agaat 2921424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5967919 - 5967715
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||  |||||||  |||| |||||||||||||||||||| || | ||    
T  5967919 cccaaagtaaatgatatcattgaattacaactataagatattttcaattcctcaagcgatgtgtacttgtgcaagtattcatgaggaaggaactctagat 5967820  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    || |||| ||||| ||| | |||| ||||||||||||||| ||||| ||||||||||||||| |  || |||||||  | |||||||| |||| ||| ||    
T  5967819 tcacacagttactgattgtaagaattttcaaggtttttgggagaccttctgttgggaaagacatcggagatggaaacccgtctatggtcaactgtcgcag 5967720  T
Q  201 agaat 205  Q
    |||||    
T  5967719 agaat 5967715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 10079787 - 10079568
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||  ||||| || |||  |||||||||||||||||||| || | ||    
T  10079787 cccaaggtaaatgatatcattgaattacagctataagatattgttaattcctcaagatatgtggaattgtccaagtattcatgaggaaggaactctagat 10079688  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    ||||||| ||||| ||| |||||||||||||||| ||||| |||||| || ||||||||||| |  || ||| |||  | |||||||| |||||| ||||    
T  10079687 tctcacagttactgattatgagaaatttcaaggtgtttggaagaccgcctattgggaaagacatcggagatgaaaaaccgtctatggtcaacttttgaag 10079588  T
Q  201 agaatagagagggagcatca 220  Q
    ||| || | ||||| |||||    
T  10079587 agagtaaaaagggaacatca 10079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 10186757 - 10186596
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||  ||||| || |||  |||||||||||||||||||| || | ||    
T  10186757 cccaaggtaaatgatatcattgaattacagctataagatattgttaattcctcaagatatgtggaattgtccaagtattcatgaggaaggaactctagat 10186658  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagac 162  Q
    ||||||| ||||||||| |||||||||||||||| ||||| |||| | || |||||||||||    
T  10186657 tctcacagttactaattatgagaaatttcaaggtgtttggaagactgcctattgggaaagac 10186596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3872233 - 3872075
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||  |||||||| |||  |||||||||||||||||||||   | ||    
T  3872233 cccaagttaaatgatatcattgaattatagctataagatattttcaattcctcaagtgatgtgtaattgtccaagtattcatgaggaaggaatgttagat 3872134  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaa 159  Q
    ||||||| ||||  ||| ||||||||||| | || |||||||||||||||| |||||||    
T  3872133 tctcacagttacatattatgagaaatttctacgtatttggtagaccgtctgctgggaaa 3872075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 11489354 - 11489499
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||| || ||  ||||||||   || |||||||||| ||| ||||| || | |     
T  11489354 cccaaggtaaacgatatcattgaattacaactataagatattttcaattcttcaagcgatgtgtaatgttgcaagtattcattaggtaggaactctagac 11489453  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagacc 146  Q
    ||||||| ||||| ||| ||||| | |||||||| |||||||||||    
T  11489454 tctcacagttactgattgtgagagacttcaaggtgtttggtagacc 11489499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 4058211 - 4058415
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||||||||||||  ||||||||||||| ||||  ||||||| ||| | ||| ||  || ||||||||||| || ||||||  |||| ||| |||||||    
T  4058211 cccaaggtaaatgatgtcattgaattacaactatcggatatttccaaattctcaagtgatttgtaactgtgagagaattcatagggaatgaactccaaat 4058310  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    |   |||||| |  ||| | ||| ||| |||||||||||| |||| |||| | ||||| || |||||| |||||| ||| | ||  |||| |||||||||    
T  4058311 tacgacaattccatattataagagattgcaaggtttttggaagactgtctctcgggaaggatgttagagatggaatgtcttttaaagtaatctttcgaag 4058410  T
Q  201 agaat 205  Q
    |||||    
T  4058411 agaat 4058415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 4077882 - 4078030
Alignment:
Q  62 tgtaactgtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaaga 161  Q
    ||||||||||| || |||||| ||||| ||| ||||||||  ||||||| |  ||| ||||| |||  ||||||||||| |||| |||| |  |||| ||    
T  4077882 tgtaactgtgagagaattcataaggaatgaactccaaattaccacaattccatattatgagagattgtaaggtttttggcagactgtctatcaggaagga 4077981  T
Q  162 cgttagaaatggaaagtcatctatggtaaactttcgaagagaatagaga 210  Q
     |||||| |||||| ||| | || ||||| |||||||||| ||| ||||    
T  4077982 tgttagagatggaatgtcttttaaggtaatctttcgaagataattgaga 4078030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 4105295 - 4105460
Alignment:
Q  3 caaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaattc 102  Q
    ||||||||| ||  ||||||||||||| ||||   |||||| ||| | ||||||  |  |||||||||||||| | |||| |||||||||||| | |||     
T  4105295 caaggtaaaagatgtcattgaattacaactatcgaatatttccaaattctcgagtgacttgtaactgtgaaagaactcataaggaaggaattcaagattg 4105394  T
Q  103 tcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 168  Q
     ||||||| |  ||||||||| | |  |||||||| || ||||| ||| | ||||| |||||||||    
T  4105395 ccacaattccatattttgagagagtgtaaggttttgggaagaccatctctcgggaaggacgttaga 4105460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 17313869 - 17313513
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||  || ||||||   |||||||||||||    
T  17313869 cccaaggtaaatgatatcattgaattacagttataagatattctcaattcctcgagcaatgtgtaactgtgaagataatcatga---aggaattccaaat 17313773  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| | |||||| |||| | ||||    
T  17313772 tctcacaattactaattttgagaaatttcaaggtttttggtaaaccatctgttgggaaagacgtcagaaatggaaagtcgtatatggtcaactgtagaag 17313673  T
Q  201 agaatagagagggagcatcaattggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaa 300  Q
    |||||||||||||||||||| ||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||| |||||||||| ||||||   |||    
T  17313672 agaatagagagggagcatcagttggctgattacatgagagaacggaattatagttatgaaattgctattatcatctgaatgtcttgactccaccagcaaa 17313573  T
Q  301 ggatatcctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcctctc 360  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17313572 ggatatcctcttaactcaagttcagttaaggaaggaagtttgtcaggtatgtctcctctc 17313513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13935851 - 13935629
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||||||||| || ||||| |||||||| || |  ||||||| ||| | ||||||  || ||||||||| | || |||||| ||||| ||| |||||||    
T  13935851 cccaaggtaaacgatatcatcgaattacaactgttggatatttccaaattctcgagtgatttgtaactgtcagagaattcataaggaatgaactccaaat 13935752  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    |  ||||||| |  ||| ||||| |||  ||||||||||| |||| |||| | ||||  || |||||| |||||| ||| | || ||||| |||||||||    
T  13935751 taccacaattccatattatgagagattgtaaggtttttggcagactgtctctcgggagggatgttagagatggaatgtcttttaaggtaatctttcgaag 13935652  T
Q  201 agaatagagagggagcatcaatt 223  Q
    ||||| ||||  || ||||||||    
T  13935651 agaattgagactgatcatcaatt 13935629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18390157 - 18389929
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||| |||| || |||||||||| | |||| || | ||    
T  18390157 cccaaagtaaatgatatcattgaattacagctataagatattttcaattcctcaagcgatgtgtaattgtgcaaatattcatgagaatggaactctagat 18390058  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    |||  ||||| || ||| |||||| ||||||||||||||||||||| ||||| ||||||||| ||||| || ||||  | ||||||||||| | ||||||    
T  18390057 tctggcaattgctgattatgagaactttcaaggtttttggtagaccttctgtagggaaagacattagagattgaaaaccgtctatggtaaattgtcgaag 18389958  T
Q  201 agaatagagagggagcatcaattggctga 229  Q
    ||||| |||||| ||||||||||||||||    
T  18389957 agaattgagaggaagcatcaattggctga 18389929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 5990626 - 5990468
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||  | |||||||||||||||||| || | ||    
T  5990626 cccaaggtgaatgatatcattgaattacaactataagatattttcaattcctcaagtgatgtgtaactgtccaggtattcatgaggaaggaactctagat 5990527  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaa 159  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5990526 tctcacagttactgattttgagaaatttcaaggtttttggtagaccgtctgttgggaaa 5990468  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 337
Target Start/End: Complemental strand, 5990352 - 5990323
Alignment:
Q  308 ctcttaactcaagttcagttaaggaaggaa 337  Q
    ||||||||||||||||||||||||||||||    
T  5990352 ctcttaactcaagttcagttaaggaaggaa 5990323  T

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Target: scaffold0603 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2839 - 3043
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 100  Q
    ||||||| |||||| |||||||||||||| |||||||||||||| |||| ||| ||  |||||||| |||| |||||||||||||||||||| || | ||    
T  2839 cccaaggcaaatgatatcattgaattacaactataagatatttttaatttctcaagtgatgtgtaattgtgcaagtattcatgaggaaggaactctagat 2938  T
Q  101 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 200  Q
    |||||||  |||| ||| |||||| ||||||||||||||| |||||||||| |||||||||| |  || |||||||  | | |||||| |||| ||||||    
T  2939 tctcacagctactgattatgagaactttcaaggtttttggaagaccgtctggtgggaaagacatcggagatggaaaaccgtgtatggtcaactgtcgaag 3038  T
Q  201 agaat 205  Q
    |||||    
T  3039 agaat 3043  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16448888 - 16448682
Alignment:
Q  1 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtga------aagtattcatgaggaaggaatt 94  Q
    |||||||||||||| | ||||||||||||||||||||||||| | |||||||| ||  ||||  || |||||      ||||| ||||||||| |||| |    
T  16448888 cccaaggtaaatgataccattgaattacagctataagatattgttaattcctcaagagatgtaaaattgtgattgcgcaagtagtcatgaggagggaact 16448789  T
Q  95 ccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactt 194  Q
    | | ||||||||||||||| ||| | |||||||||||||||||  ||||||||||||||||||||||| |  || ||| |||| |||||||||| | ||     
T  16448788 ctagattctcacaattactgattatcagaaatttcaaggttttctgtagaccgtctgttgggaaagacatcggagatgaaaagccatctatggttagctg 16448689  T
Q  195 tcgaaga 201  Q
    |||||||    
T  16448688 tcgaaga 16448682  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 42506594 - 42506504
Alignment:
Q  47 attcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttt 137  Q
    |||||| ||| ||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  42506594 attccttgagcaatgtgtaattgtgcaagtattcatgagaaaggaattccaaattctcgcaattacttattatgagaactttcaaggtttt 42506504  T

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