View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_low_21 (Length: 219)
Name: NF10354_low_21
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 43947096 - 43947300
Alignment:
| Q |
1 |
ttcctttttccctcctttctctgcagtaccgttttttccattcaaatcatgctttttccttcattttcattgccagggttggaaaaacctccttgatgaa |
100 |
Q |
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| T |
43947096 |
ttcctttttccctcctttctctgcagtaccgttttttccattcaaatcatgctttttccttcattttcattgccagggttggaaaaacctccttgatgaa |
43947195 |
T |
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| Q |
101 |
tcagtatccttgttcctcggtttcctcctaatttcatgcttaatctttatgggttttcatttctttgaaacacatctcataaagttttgatttttaactc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43947196 |
tcagtatccttgttcctcggtttcctcgtaatttcatgcttaatctttatgggttttcatttctttgaaacacatctcataaagttttgatttttaactc |
43947295 |
T |
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| Q |
201 |
ctttg |
205 |
Q |
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||||| |
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| T |
43947296 |
ctttg |
43947300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 14294744 - 14294708
Alignment:
| Q |
75 |
agggttggaaaaacctccttgatgaatcagtatcctt |
111 |
Q |
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|||||||||||||| || ||||||||||||||||||| |
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| T |
14294744 |
agggttggaaaaacatctttgatgaatcagtatcctt |
14294708 |
T |
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