View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10354_low_6 (Length: 329)
Name: NF10354_low_6
Description: NF10354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10354_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 8682744 - 8683054
Alignment:
| Q |
19 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
118 |
Q |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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| Q |
119 |
attacctggaattcagtattgcattaacagtccacctccatggcgttagtacacctatctt-atgtatttttgaaaaaattatgacatgttgatgaaaaa |
217 |
Q |
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| T |
8682844 |
attacctggaattcagtattgcattaacagtccacctccatggcgttagtacacctatcttaatgtatttttgaaaaaattatgacatgttgatgaaaaa |
8682943 |
T |
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| Q |
218 |
ttgattaactaatttttgcttaagagtgtactggttcacaatttgaatcaatcttttgatcataatgcaggtcaagcagtgatattgggatttcagcatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8682944 |
ttgattaactaatttttgcttaagagtgtactggttcacaatttgaatcaatc-tttgatcataatgcaggtcaagcagtgatattgggatttcagcatt |
8683042 |
T |
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| Q |
318 |
accttctaactc |
329 |
Q |
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| T |
8683043 |
accttctaactc |
8683054 |
T |
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