View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10355_high_2 (Length: 436)
Name: NF10355_high_2
Description: NF10355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10355_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 12508310 - 12508716
Alignment:
| Q |
17 |
caaagcagatatttgattgtaattatgattcctacgattgaatatgctagcaaaagtaaaatgatcactcactctactctttgaaaacttgttgttatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12508310 |
caaagcagatatttgattgtaattatgattcctacggttgaatatgctagcaaaagtaaaatgatcactcactctactctttgaaaacttgttgttatta |
12508409 |
T |
|
| Q |
117 |
tgatcacttgttcttgccataatactttgaagattcttgctcaattttgctttcaatgaagcaaaagttaaactgttttttgcttcatttgtttgtggtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508410 |
tgatcacttgttcttgccataatactttgaagattcttgctcaattttgctttcaatgaagcaaaagttaaactgttttttgcttcatttgtttgtggtg |
12508509 |
T |
|
| Q |
217 |
atgatactaatccttgatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagcattttctccgcgtaaagctcgagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508510 |
atgatactaatccttgatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagcattttctccgcgtaaagctcgagc |
12508609 |
T |
|
| Q |
317 |
agcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508610 |
agcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatcta |
12508709 |
T |
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| Q |
417 |
cctgatg |
423 |
Q |
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||||||| |
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| T |
12508710 |
cctgatg |
12508716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 423
Target Start/End: Original strand, 33274267 - 33274375
Alignment:
| Q |
315 |
gcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatc |
414 |
Q |
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|||||||| || ||||||| ||| ||||| || | ||| ||| | ||||||||||| | ||||| | |||| || ||||||||||||||||||||||| |
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| T |
33274267 |
gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc |
33274366 |
T |
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| Q |
415 |
tacctgatg |
423 |
Q |
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| ||||||| |
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| T |
33274367 |
tccctgatg |
33274375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 46024103 - 46024067
Alignment:
| Q |
387 |
gatgagtctttgatctcagctacccatctacctgatg |
423 |
Q |
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|||||||||||||||||||||| |||||| ||||||| |
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| T |
46024103 |
gatgagtctttgatctcagctatccatcttcctgatg |
46024067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 46265264 - 46265300
Alignment:
| Q |
387 |
gatgagtctttgatctcagctacccatctacctgatg |
423 |
Q |
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|||||||||||||||||||||| |||||| ||||||| |
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| T |
46265264 |
gatgagtctttgatctcagctatccatcttcctgatg |
46265300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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