View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10355_low_1 (Length: 821)
Name: NF10355_low_1
Description: NF10355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10355_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 780
Target Start/End: Complemental strand, 28790035 - 28789262
Alignment:
| Q |
7 |
ttaaggatgaccataatcattaatatcaaaaatattttcaagtataggtatgtatttctcagttgaatgaatgaaaattatgtttatctgattaatgatt |
106 |
Q |
| |
|
|||||||| ||| ||||| || |||| | | ||||||| |||| ||||||||| ||||||||||| ||||||| | ||||||||||| | || |||||| |
|
|
| T |
28790035 |
ttaaggattaccgtaatctttcatattacagatattttaaagtctaggtatgtctttctcagttgcatgaatgcagcttatgtttatcagtttcatgatt |
28789936 |
T |
|
| Q |
107 |
gagaggatttcaaacagttacatctttgaaaccggtttataaaaaatacaagcatgaagatcttttgccaacaaagttgagttgcttcctcaacnnnnnn |
206 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28789935 |
gagaggctttctaacagttacatctttgaaaccggtttatgaaaaatacaagcatgaagatcttttgccaacaaagttggtttgcttcctcaactttttt |
28789836 |
T |
|
| Q |
207 |
nnnngctgaaaagttgcttcttcaacttgatagagagagtgtgtctgtgagataatgataataactaacaaaaaagaatatcaatatgctgaccctaatt |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28789835 |
ttt-gccgaaaagttgcttcttcaacttgataaggagagtgtgtctgtgagataatgaaaataactaacaaaaaagaatgtcaatatgctgaccctaatc |
28789737 |
T |
|
| Q |
307 |
ttctcttgatgagaaggctaatcaactaagaaataatacgcggataactaatgctgctataatcattctgaattaaaatgcttaaataatgaaaactaga |
406 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28789736 |
ttctttagatgagaaggctaatcaactaagaaataatacgcagataactaatgctgctataatcattctgaattaaaatgcttaaataatgaaaactaga |
28789637 |
T |
|
| Q |
407 |
acttgaagcctcaatgacgaagccagcattcacttcacgatagatatgatggaaagagaaaggccaagctgaagagttgagtaaggcatggatctcgtca |
506 |
Q |
| |
|
|||| ||| |||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28789636 |
acttaaagtctcaatgacgaagccaacaatcatttcacgatagatatgatggatagagaaaggccaagctgaagagttgagtaaggcatggatcttgtca |
28789537 |
T |
|
| Q |
507 |
aggaaaaatttaaaaagtaaggaggaagtcgttttggactaaaccatccaagagcaaccaccgctgaatcagtac-aaaaataactgcatgaagattaag |
605 |
Q |
| |
|
|||| | ||||||||||||||||||||||| || ||| ||||||| ||| ||||||||||||||||| | |||||| |||| | || ||||||| |
|
|
| T |
28789536 |
aggagagatttaaaaagtaaggaggaagtcattctgggtcgaaccatc--tgagggaccaccgctgaatcagttctaaaaattactgtacgaggattaag |
28789439 |
T |
|
| Q |
606 |
ctctccagcacacttactacc-ataa-gagagcacgaagcttggcaatgaaagcagtacaagctcccaggttgcagaaatatccttgaatgaaacttcga |
703 |
Q |
| |
|
||| | ||||||||||||| |||| ||||||||||||| || | || ||| |||| ||||| |||||||||||| |||||||||||||||||| | |
|
|
| T |
28789438 |
ctcacggccacacttactaccaataaggagagcacgaagcacggaatagagagccatacatgctcctaggttgcagaaaaatccttgaatgaaacttcca |
28789339 |
T |
|
| Q |
704 |
ttagaacagatgatccctccatattgaccttaacgacatttaggggtggaggagaccaaccaatccgcctccattgt |
780 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28789338 |
ttagaacagatgatccatccatattgaccttaacaacatttgggggtcgaggagaccaaccaatccgcctccattgt |
28789262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 431 - 785
Target Start/End: Complemental strand, 28782626 - 28782273
Alignment:
| Q |
431 |
agcattcacttcacgatagatatgatggaaagagaaaggccaagctgaagagttgagtaaggcatggatctcgtcaaggaaaaatttaaaaagtaaggag |
530 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
28782626 |
agcattcgcttcacgttagatatgatggatagagaaatcccaagctgaagagttgagtaaggcatgaaactcgtcaaggagaaatttaaaaagtaaggag |
28782527 |
T |
|
| Q |
531 |
gaagtcgttttggactaaaccatccaagagcaaccaccgctgaatcagtacaaaaataactgcatgaagattaagctctccagcacacttactaccataa |
630 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28782526 |
gatgtcgttttggactgaaccatccaagagcaaccatcgctgaatcag-acaaaaataacggcaggaagattaagctctccagcacacttactaccataa |
28782428 |
T |
|
| Q |
631 |
gagagcacgaagcttggcaatgaaagcagtacaagctcccaggttgcagaaatatccttgaatgaaacttcgattagaacagatgatccctccatattga |
730 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28782427 |
gagagcacgaagctcggcattgaaagcagtacaagctcccaggttgcagaaatatccttgaatgaaacttcgattagaacagatgatccctccatattga |
28782328 |
T |
|
| Q |
731 |
ccttaacgacatttaggggtggaggagaccaaccaatccgcctccattgtctctg |
785 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28782327 |
ccttaacaacatgtaggggtggaggagaccaaccaatccgcctccattgtctctg |
28782273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 785 - 821
Target Start/End: Complemental strand, 42445114 - 42445078
Alignment:
| Q |
785 |
ggttatcaaatgtggtgcgggttcatctcactcgacc |
821 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42445114 |
ggttatcaaatgtggtgcgggttcatctctctcgacc |
42445078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 410
Target Start/End: Complemental strand, 28782742 - 28782682
Alignment:
| Q |
348 |
ggataactaatgctgctataatcattctgaattaaaatgcttaaataatgaaaactagaactt |
410 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
28782742 |
ggataactaatgcccctataatcatt--gagttaaaatgcttgaataaggaaaactagaactt |
28782682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University