View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10355_low_3 (Length: 352)
Name: NF10355_low_3
Description: NF10355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10355_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 4551866 - 4551541
Alignment:
| Q |
16 |
cagtagggaccttaatgaaaatcaatgcaatcaatgtttggtggctatgttagacaaagttcctaaatgctgtgggacaaagattggttggcaggttctt |
115 |
Q |
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| T |
4551866 |
cagtagggaccttaatgaaaatcaatgtaatcaatgtttggtggctatgttagacaaagttcctaaatgctgtgggacaaagattggttggcaggttctt |
4551767 |
T |
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| Q |
116 |
gctccaagttgtttgataaagtatgatgattttatgttctaccagcttacttttgctccaaattcaggtatgtatggaagataatttatgattcactttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4551766 |
gctccaagttgtttgataaagtatgatgattttatgttctaccagcttacttttgctccaaattcaggtatgtatggaagataatttatgattcactttt |
4551667 |
T |
|
| Q |
216 |
ttcttttgtttacatgtttgttgctattggttgttccttctatcagttatgaagataataaaacaccatctaaattaaatactctagttttataatctag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4551666 |
ttcttttgtttacatgtttgttgctattggttgttccttctatcagttatgaagataataaaacaccatctaaattaaatactctagttttataatctag |
4551567 |
T |
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| Q |
316 |
actaaaatcttttttactttcttctt |
341 |
Q |
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| T |
4551566 |
actaaaatcttttttactttcttctt |
4551541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 3086617 - 3086946
Alignment:
| Q |
17 |
agtagggaccttaatgaaaatcaatgcaatcaatgtttggtggctatgttagacaaagttcctaaatgctgtgggacaaagattggttggcaggttcttg |
116 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086617 |
agtagggaccttaatgaaaaacaatgtaatcaatgtttggaagctatgttggacaaagttcctaaatgctgtgggacaaagattggttggcaggttcttg |
3086716 |
T |
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| Q |
117 |
ctccaagttgtttgataaagtatgatgattttatgttctaccagcttacttttgc---------------tccaaattcaggtatgtatggaagataatt |
201 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||| ||||| |||||||||||||||| |
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| T |
3086717 |
ctccaagttgtttgatgaagtatgatgattttatgttctaccaacttacttctgcaacttctgctcctttgccaaatccaggtttgtatggaagataatt |
3086816 |
T |
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| Q |
202 |
tatgattcacttttttcttttgtttacatgtttgttgc----tattggttgttccttctatcagttatgaagataataaaacaccatctaaattaaatac |
297 |
Q |
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| ||| |||||||||| || | ||||| ||||||| | ||||| || ||| |||||| | ||||||||||| ||||||||||| || |||||| |
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| T |
3086817 |
tttgactcacttttttattcttgttacaagtttgtttctatatattgtttcttcattctattaattatgaagatattaaaacaccattta----aaatac |
3086912 |
T |
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| Q |
298 |
tctagttttataatctagactaaaatctttttta |
331 |
Q |
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||||||||||||||| |||||| ||||||||||| |
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| T |
3086913 |
tctagttttataatcaagactagaatctttttta |
3086946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 3076736 - 3076888
Alignment:
| Q |
17 |
agtagggaccttaatgaaaatcaatgcaatcaatgtttggtggctatgttagacaaagttcctaaatgctgtgggacaaagattggttggcaggttcttg |
116 |
Q |
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||||||||||||| ||| || ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |
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| T |
3076736 |
agtagggaccttagtgacaagcaatgtaatcaatgtttggaggctatgttagacaaagttcctaaatgttgtgggacaaagattggttggcaagttgttg |
3076835 |
T |
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| Q |
117 |
ctccaagttgtttgataaagtatgatgattttatgttctaccagcttactttt |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
3076836 |
ctccaagttgtttgataaagtatgatgattttatgttctacaagcttattttt |
3076888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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