View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10355_low_8 (Length: 242)

Name: NF10355_low_8
Description: NF10355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10355_low_8
NF10355_low_8
[»] chr1 (1 HSPs)
chr1 (1-232)||(26087247-26087478)
[»] chr3 (1 HSPs)
chr3 (1-229)||(4819124-4819352)
[»] chr7 (2 HSPs)
chr7 (22-232)||(6612051-6612261)
chr7 (70-233)||(17293928-17294091)
[»] chr8 (10 HSPs)
chr8 (8-230)||(15329242-15329464)
chr8 (8-230)||(15509611-15509833)
chr8 (12-230)||(28865338-28865557)
chr8 (1-231)||(30648185-30648415)
chr8 (18-235)||(14726610-14726827)
chr8 (69-184)||(24508498-24508613)
chr8 (153-228)||(26088481-26088556)
chr8 (22-197)||(29552134-29552309)
chr8 (13-101)||(26088608-26088696)
chr8 (73-205)||(27712403-27712535)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26087247 - 26087478
Alignment:
Q  1 cctctttgtttatttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacag 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26087247 cctctttgtttatttgtttcgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcggtctcacacctcacag 26087346  T
Q  101 tcacatctctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26087347 tcacatctctaatggaattaggacatacaaggaggaatttagctaaaaggtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctct 26087446  T
Q  201 tccttgaaatcgaacaagttctttattgatgt 232  Q
    |||||||| || ||||||||||||||||||||    
T  26087447 tccttgaactctaacaagttctttattgatgt 26087478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4819352 - 4819124
Alignment:
Q  1 cctctttgtttatttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacag 100  Q
    |||||||||||||||||||||||||| || | ||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||  |||||||||    
T  4819352 cctctttgtttatttgttttgagccagccgagaagcacttgaagggcctcatactgttcattcatgacagcaatatgcaatgcagtctcaaacctcacag 4819253  T
Q  101 tcacatctctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcg 200  Q
    |||  | |  ||| || |  |||||  ||| ||| || ||||||||||  |||||||| ||||||||||||||||||||||||| ||||| ||| | ||     
T  4819252 tcaagtattcaatagattccggacaagcaaagagaaaattagctaaaagttcaacctcgccaatttgacttgcaaaatgaagaggagttatgccatttct 4819153  T
Q  201 tccttgaaatcgaacaagttctttattga 229  Q
    ||||| || || |||||| || |||||||    
T  4819152 tccttcaactctaacaaggtccttattga 4819124  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 6612051 - 6612261
Alignment:
Q  22 agccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacagtcacatctctaatggaattag 121  Q
    ||||| |||||||||||| ||||||||||| |||||| |||||| ||||||||||||| ||||||||||  ||||||||||| || |  |||||| |  |    
T  6612051 agccagccaacaagtactcgaagggcctcaaattgttgattcttaatagcaatatgcagtgcagtctcgtgcctcacagtcaaatattcaatggattccg 6612150  T
Q  122 gacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcgtccttgaaatcgaacaagttc 221  Q
    |||| |    ||| |||||||||||||  |||||||| ||||||||||||||||||||||||| ||||| | |||||  |||||||| || |||||| ||    
T  6612151 gacacaacttgagaaatttagctaaaagatcaacctcaccaatttgacttgcaaaatgaagaggagttatggcttcttttccttgaattctaacaaggtc 6612250  T
Q  222 tttattgatgt 232  Q
    |||||||||||    
T  6612251 tttattgatgt 6612261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 17293928 - 17294091
Alignment:
Q  70 gcaatatgcaatgcagtctcgcacctcacagtcacatctctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgac 169  Q
    |||||||||| |||||| || | || |||||||||||||  ||||||||| |||||  |||  || |||||||||||||  |||||||| ||||||||||    
T  17293928 gcaatatgcagtgcagtttcaccccccacagtcacatcttgaatggaattcggacaagcaaaaagtaatttagctaaaagttcaacctcaccaatttgac 17294027  T
Q  170 ttgcaaaatgaagagcagttaagccttctcgtccttgaaatcgaacaagttctttattgatgtc 233  Q
    ||||||||||||||| ||||||||||||||  ||||||| ||||||||| |||||||| |||||    
T  17294028 ttgcaaaatgaagaggagttaagccttctctcccttgaactcgaacaaggtctttattaatgtc 17294091  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 15329464 - 15329242
Alignment:
Q  8 gtttatttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacagtcacatc 107  Q
    |||||||| ||| |||||| |||||||| ||||||| || |||| ||||||||||||| ||||||||||||| ||  ||||||||||||||||||  |||    
T  15329464 gtttatttttttcgagccacccaacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatc 15329365  T
Q  108 tctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcgtccttga 207  Q
    |  |||||| |  |||||    | ||| || | ||||||||  |||||||| |||||||| |||||||||||||||| ||||||||| |||||||||  |    
T  15329364 ttcaatggattctggacacgagaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctata 15329265  T
Q  208 aatcgaacaagttctttattgat 230  Q
    | || |||||| ||||| |||||    
T  15329264 actctaacaaggtctttgttgat 15329242  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 15509833 - 15509611
Alignment:
Q  8 gtttatttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacagtcacatc 107  Q
    |||||||| ||| |||||| |||||||| ||||||| || |||| ||||||||||||| ||||||||||||| ||  ||||||||||||||||||  |||    
T  15509833 gtttatttttttcgagccacccaacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatc 15509734  T
Q  108 tctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcgtccttga 207  Q
    |  |||||| |  |||||    | ||| || | ||||||||  |||||||| |||||||| |||||||||||||||| ||||||||| |||||||||  |    
T  15509733 ttcaatggattctggacacgagaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctata 15509634  T
Q  208 aatcgaacaagttctttattgat 230  Q
    | || |||||| ||||| |||||    
T  15509633 actctaacaaggtctttgttgat 15509611  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 28865557 - 28865338
Alignment:
Q  12 atttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaat-gcagtctcgcacctcacagtcacatctct 110  Q
    |||| ||| ||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||| | |  ||||| ||||||||||||  ||||      
T  28865557 atttttttcgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgcagtgggggtctcacacctcacagtccaatcttc 28865458  T
Q  111 aatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcgtccttgaaat 210  Q
    |||||| |  ||||| |  | ||| || | ||||||||  |||||||| |||||||| |||||||||||||||| ||||||||| |||||||||  || |    
T  28865457 aatggattctggacacaataagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctctaact 28865358  T
Q  211 cgaacaagttctttattgat 230  Q
    | |||||| ||||| |||||    
T  28865357 ctaacaaggtctttgttgat 28865338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30648415 - 30648185
Alignment:
Q  1 cctctttgtttatttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacag 100  Q
    ||||| ||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||| || | || |||||| | ||||||||||| ||||||||    
T  30648415 cctctctgtgtattttttttgagccagctaacaagtacttgaagggcctcatattgttcatttttaacagaaatatggagtgcagtctcgcgcctcacag 30648316  T
Q  101 tcacatctctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcg 200  Q
    |||  | |  ||| || |  ||||| | | |||| || | |||||| |  | |||||| ||| |||||| |||||||||||||| ||||| ||||||||     
T  30648315 tcaagtattcaattgattccggacacaaacggagaaagtaagctaacatttgaacctcaccattttgacatgcaaaatgaagaggagttatgccttctct 30648216  T
Q  201 tccttgaaatcgaacaagttctttattgatg 231  Q
    ||||  || || |||||| ||||||||||||    
T  30648215 tcctctaactctaacaaggtctttattgatg 30648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 14726827 - 14726610
Alignment:
Q  18 tttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacagtcacatctctaatggaa 117  Q
    ||||||||| ||||||||||||||||| |||||| | ||||||||||| | ||||||||||| |||||||||   ||| |||||||  | |  ||||||     
T  14726827 tttgagccagccaacaagtacttgaagtgcctcaaactgttcattcttaacagcaatatgcagtgcagtctcctgccttacagtcaagtattcaatggat 14726728  T
Q  118 ttaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcgtccttgaaatcgaacaa 217  Q
    |  ||||| |  | ||| ||   | ||||||  |||||||| ||| |||||||||| |||||||||| |||||||||||||| ||||| || || |||||    
T  14726727 tccggacacaataagagaaagcaaactaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaa 14726628  T
Q  218 gttctttattgatgtcca 235  Q
    | ||||||||||||||||    
T  14726627 ggtctttattgatgtcca 14726610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 24508613 - 24508498
Alignment:
Q  69 agcaatatgcaatgcagtctcgcacctcacagtcacatctctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttga 168  Q
    ||||||||||||||||||||  | ||||||||| || |||  |||||| |  |||||  ||| ||||| |||||||||||  ||| |||| ||| |||||    
T  24508613 agcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccattttga 24508514  T
Q  169 cttgcaaaatgaagag 184  Q
    ||||||||||||||||    
T  24508513 cttgcaaaatgaagag 24508498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 26088556 - 26088481
Alignment:
Q  153 aacctctccaatttgacttgcaaaatgaagagcagttaagccttctcgtccttgaaatcgaacaagttctttattg 228  Q
    |||||| ||||||||||||||||||||||||| |||||  ||||||| ||||| || || |||||| |||||||||    
T  26088556 aacctcaccaatttgacttgcaaaatgaagaggagttataccttctcttcctttaattctaacaaggtctttattg 26088481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 29552309 - 29552134
Alignment:
Q  22 agccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacagtcacatctctaatggaattag 121  Q
    ||||| ||||| |||||||  ||||| ||  | ||| |||| || ||||||||||| | ||| |||||||||||||||||||  | |  ||| || | ||    
T  29552309 agccagccaactagtacttttagggcgtcgaactgtgcattattaatagcaatatgaagtgcggtctcgcacctcacagtcaagtattcaatagattcag 29552210  T
Q  122 gacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttc 197  Q
    ||||| |   ||| || | |||||||| |||||||||||||||||| |||||| ||||||||| ||| ||||||||    
T  29552209 gacatgcgttgagaaagtaagctaaaaggtcaacctctccaatttggcttgcataatgaagaggagtcaagccttc 29552134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 26088696 - 26088608
Alignment:
Q  13 tttgttttgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcagtctcgcacctcacagt 101  Q
    |||||| |||||||   ||||||||||||||| |||||| | ||| ||||||| | ||||||||||| ||||||||||  |||||||||    
T  26088696 tttgttctgagccagataacaagtacttgaagagcctcaaactgtccattcttaacagcaatatgcagtgcagtctcgtgcctcacagt 26088608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 27712535 - 27712403
Alignment:
Q  73 atatgcaatgcagtctcgcacctcacagtcacatctctaatggaattaggacatacaaggaggaatttagctaaaaagtcaacctctccaatttgacttg 172  Q
    |||||||  |||||||| | |||||||||||| |||  ||| |||| ||||||  |||  ||||| |||||||||| |||||| ||| || | |||||||    
T  27712535 atatgcagagcagtctcacccctcacagtcacgtcttcaatagaatcaggacaagcaacaaggaacttagctaaaaggtcaacttcttcattatgacttg 27712436  T
Q  173 caaaatgaagagcagttaagccttctcgtcctt 205  Q
    |||||||| ||| |||  | ||||||| |||||    
T  27712435 caaaatgaggaggagtccaaccttctcttcctt 27712403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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