View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10356_high_3 (Length: 205)

Name: NF10356_high_3
Description: NF10356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10356_high_3
NF10356_high_3
[»] chr1 (1 HSPs)
chr1 (23-192)||(563741-563910)
[»] chr8 (1 HSPs)
chr8 (18-102)||(7632693-7632778)
[»] chr6 (2 HSPs)
chr6 (27-101)||(9540527-9540601)
chr6 (28-101)||(34949017-34949090)
[»] chr2 (1 HSPs)
chr2 (23-101)||(4377156-4377234)
[»] chr3 (2 HSPs)
chr3 (21-101)||(46621516-46621596)
chr3 (59-101)||(43751799-43751841)
[»] chr5 (2 HSPs)
chr5 (39-102)||(8217144-8217207)
chr5 (58-102)||(33043905-33043949)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 563910 - 563741
Alignment:
Q  23 ttcgaattatagaatttaaatgacataaacaccatataaaatcttcaaaaacacgttaacatatttcaaattttagaattcgaccagggcatgataagat 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  563910 ttcgaattatagaatttaaatgacataaacaccctataaaatcctcaaaaacacgttaacatatttcaaattttagaattcgactagggcatgataagat 563811  T
Q  123 aaactcatacgatgggaaagtaaccacctaatgggtttccatcacatagttgtatggtcgatgtcgtaag 192  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  563810 aaactcataggatgggaaagtaaccacctaatgggtttccatcacatagttgtatggtcgatgtcgtaag 563741  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 7632778 - 7632693
Alignment:
Q  18 tgcaattcgaattatagaatttaaatgacataaacaccatat-aaaatcttcaaaaacacgttaacatatttcaaattttagaatt 102  Q
    |||||||||||||||||||| | || ||||||||||||  || |||| ||||||||| ||||| | ||||||||||||||| ||||    
T  7632778 tgcaattcgaattatagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatt 7632693  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 9540527 - 9540601
Alignment:
Q  27 aattatagaatttaaatgacataaacaccatataaaat-cttcaaaaacacgttaacatatttcaaattttagaat 101  Q
    ||||||| ||||| ||||||||||||||| |||||||| ||||||||| ||| ||| |||||||| ||||||||||    
T  9540527 aattataaaatttgaatgacataaacaccctataaaatccttcaaaaa-acggtaagatatttcagattttagaat 9540601  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 34949090 - 34949017
Alignment:
Q  28 attatagaatttaaatgacataaacaccatataaaatcttcaaaaacacgttaacatatttcaaattttagaat 101  Q
    |||||| |||| ||||| |||||||||| |||||||||||| ||||||  || | |||||||  ||||||||||    
T  34949090 attatataattcaaatggcataaacaccctataaaatcttccaaaacatattcaaatatttcgtattttagaat 34949017  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 4377156 - 4377234
Alignment:
Q  23 ttcgaattatagaatttaaatgacataaacaccatataaaatcttcaaaaacacgttaacatatttcaaattttagaat 101  Q
    |||| ||||| |||||| ||||| |||||||||  ||||||  || ||||||||||||| ||||||| |||||||||||    
T  4377156 ttcggattatggaatttgaatgatataaacaccccataaaacttttaaaaacacgttaaaatatttccaattttagaat 4377234  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 46621516 - 46621596
Alignment:
Q  21 aattcgaattatagaatttaaatgacataaacaccatataaaatcttcaaaaacacgttaacatatttcaaattttagaat 101  Q
    ||||||||||||| |||| |||  ||||||||||| |||||||||||| |||| || |||| |||||| | |||| |||||    
T  46621516 aattcgaattataaaattcaaacaacataaacaccttataaaatcttccaaaatacattaaaatatttaagatttaagaat 46621596  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 43751841 - 43751799
Alignment:
Q  59 taaaatcttcaaaaacacgttaacatatttcaaattttagaat 101  Q
    ||||||||||||||||||||||| |||||| | ||||||||||    
T  43751841 taaaatcttcaaaaacacgttaaaatattttagattttagaat 43751799  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 8217207 - 8217144
Alignment:
Q  39 taaatgacataaacaccatataaaatcttcaaaaacacgttaacatatttcaaattttagaatt 102  Q
    |||||||||||||||||  ||||||   ||||||||||||||| | |||||| |||||||||||    
T  8217207 taaatgacataaacaccccataaaaatctcaaaaacacgttaaaacatttcagattttagaatt 8217144  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 33043949 - 33043905
Alignment:
Q  58 ataaaatcttcaaaaacacgttaacatatttcaaattttagaatt 102  Q
    ||||||||||  |||||||||||| |||||||| |||||||||||    
T  33043949 ataaaatcttttaaaacacgttaaaatatttcagattttagaatt 33043905  T

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