View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10356_low_1 (Length: 310)
Name: NF10356_low_1
Description: NF10356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10356_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 31219027 - 31218739
Alignment:
| Q |
1 |
ggccaaggagttcctaggaaaaacctaagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagagtctagt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
31219027 |
ggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagagtccaat |
31218928 |
T |
|
| Q |
101 |
cacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatggtgctgataatgaaggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31218927 |
cacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaaggac |
31218828 |
T |
|
| Q |
201 |
attcagacggtatcacagctggtgcgcgcaaaaagaaaagttcaacagttgctccacccaccccatttacaggggagaagcgatacaat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218827 |
attcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacaggggagaagcgatacaat |
31218739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 31213272 - 31212984
Alignment:
| Q |
1 |
ggccaaggagttcctaggaaaaacctaagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagagtctagt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
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| T |
31213272 |
ggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagattccatt |
31213173 |
T |
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| Q |
101 |
cacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatggtgctgataatgaaggac |
200 |
Q |
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| T |
31213172 |
cacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagtttgaagaaggtgagcagaatgctgctgataatgaaggac |
31213073 |
T |
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| Q |
201 |
attcagacggtatcacagctggtgcgcgcaaaaagaaaagttcaacagttgctccacccaccccatttacaggggagaagcgatacaat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213072 |
attcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacaggggagaagcgatacaat |
31212984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 47896202 - 47896490
Alignment:
| Q |
1 |
ggccaaggagttcctaggaaaaacctaagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagagtctagt |
100 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
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| T |
47896202 |
ggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagaatccaat |
47896301 |
T |
|
| Q |
101 |
cacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatggtgctgataatgaaggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47896302 |
cacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaaggac |
47896401 |
T |
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| Q |
201 |
attcagacggtatcacagctggtgcgcgcaaaaagaaaagttcaacagttgctccacccaccccatttacaggggagaagcgatacaat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896402 |
attcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacaggggagaagcgatacaat |
47896490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 261
Target Start/End: Complemental strand, 4958377 - 4958207
Alignment:
| Q |
91 |
agagtctagtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatggtgctgat |
190 |
Q |
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|||||| ||||||||||||||||||| || | ||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
4958377 |
agagtccagtcacactgagaaagctactggtaacagtacaaggaagcgacaacgtgcacaaacttctaagattgctgaaggtgagcagaatgctgctgat |
4958278 |
T |
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| Q |
191 |
aatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaagttcaacagttgctccacccac |
261 |
Q |
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| |||||||||||||||| || |||||||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
4958277 |
agtgaaggacattcagacagttcaacagctggtgggcgcaagaagaaaaggtcaacagttgctccacccac |
4958207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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