View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10356_low_3 (Length: 257)
Name: NF10356_low_3
Description: NF10356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10356_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 696942 - 697169
Alignment:
| Q |
5 |
tggagaagcagagaaatcttgctgcttaatggtttagaaatgttttatgaaactagaaaaattccatttttatattttattacatttgaaaggaaagaaa |
104 |
Q |
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| T |
696942 |
tggagaattagagaaatcttgctgcttaatggtttagaaatgttttatgaaactataaaaattccatttttatattttattacatttgaaaggaaagaaa |
697041 |
T |
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| Q |
105 |
aaattgggcatgaaacaatgtattcaattttatatgttagttttgtgctagtaaattaagatttaagac-------nnnnnnnnntcaagattttgtggt |
197 |
Q |
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| T |
697042 |
aaattgggcatgaaacaatgtattcaattttatatgttagttttgtgctagtaaattaagatttaagacaaaaaaaaaaaaaaaatcaagattttgtggt |
697141 |
T |
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| Q |
198 |
atagtgagggaatggatgcgattgggag |
225 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
697142 |
atagtgagggaatggatgcgattgggag |
697169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 765240 - 765467
Alignment:
| Q |
5 |
tggagaagcagagaaatcttgctgcttaatggtttagaaatgttttatgaaactagaaaaattccatttttatattttattacatttgaaaggaaagaaa |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
765240 |
tggagaattagagaaatcttgctgcttaatggtttagaaatgttttatgaaactataaaaattccatttttatattttattacatttgaaaggaaagaaa |
765339 |
T |
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| Q |
105 |
aaattgggcatgaaacaatgtattcaattttatatgttagttttgtgctagtaaattaagatttaagac-------nnnnnnnnntcaagattttgtggt |
197 |
Q |
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| T |
765340 |
aaattgggcatgaaacaatgtattcaattttatatgttagttttgtgctagtaaattaagatttaagacaaaaaaaaaaaaaaaatcaagattttgtggt |
765439 |
T |
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| Q |
198 |
atagtgagggaatggatgcgattgggag |
225 |
Q |
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| T |
765440 |
atagtgagggaatggatgcgattgggag |
765467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Original strand, 697875 - 697906
Alignment:
| Q |
226 |
gaaataattttttgtctggttagaaggaaatc |
257 |
Q |
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| T |
697875 |
gaaataattttttgtctggttagaaggaaatc |
697906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Original strand, 766173 - 766204
Alignment:
| Q |
226 |
gaaataattttttgtctggttagaaggaaatc |
257 |
Q |
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| T |
766173 |
gaaataattttttgtctggttagaaggaaatc |
766204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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